USP6 Gene (Ubiquitin Specific Peptidase 6)

A key oncogene involved in aneurysmal bone cyst formation and other neoplasms

Gene Information Card

Symbol USP6
Full Name Ubiquitin Specific Peptidase 6
Gene Type Protein coding
Chromosomal Location 17p13.2
NCBI Gene ID 9098 ncbi.nlm.nih.gov/gene/9098
Ensembl ID ENSG00000129204
UniProt ID P35125
OMIM ID 604334
HGNC ID 12612
Aliases Tre2, TRE17, USP6 (ubiquitin specific peptidase 6)

Description

USP6 (Ubiquitin Specific Peptidase 6) encodes a deubiquitinating enzyme that removes ubiquitin from target proteins, thereby regulating protein stability and signaling pathways. It is a well-established oncogene, frequently activated by chromosomal rearrangements that lead to its overexpression. USP6 fusions are a hallmark of primary aneurysmal bone cyst (ABC) and nodular fasciitis, and are also found in other benign and malignant neoplasms.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Aneurysmal Bone Cyst (ABC) USP6 gene fusions (e.g., CDH11-USP6) lead to USP6 overexpression, driving osteoclastogenesis and tumor formation. NCBI Gene, OMIM, ClinVar
Nodular Fasciitis USP6 rearrangements (e.g., MYH9-USP6) cause USP6 overexpression, promoting myofibroblastic proliferation. NCBI Gene, OMIM, ClinVar
Myositis Ossificans USP6 fusions are identified in a subset of cases, suggesting a similar mechanism to ABC. NCBI Gene, OMIM
Fibroma of Tendon Sheath USP6 rearrangements have been reported, linking it to benign fibrous tumors. NCBI Gene, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Bone marrow 0.0 Not detected
Lymph node 0.0 Not detected
Spleen 0.0 Not detected
Testis 0.0 Not detected
Thyroid 0.0 Not detected
Adipose tissue 0.0 Not detected
Brain 0.0 Not detected
Heart 0.0 Not detected
Kidney 0.0 Not detected
Liver 0.0 Not detected
Lung 0.0 Not detected
Pancreas 0.0 Not detected
Prostate 0.0 Not detected
Skin 0.0 Not detected
Small intestine 0.0 Not detected
Stomach 0.0 Not detected
Colon 0.0 Not detected
Esophagus 0.0 Not detected
Ovary 0.0 Not detected
Breast 0.0 Not detected
Cervix 0.0 Not detected
Endometrium 0.0 Not detected
Fallopian tube 0.0 Not detected
Vagina 0.0 Not detected
Placenta 0.0 Not detected
Adrenal gland 0.0 Not detected
Pituitary gland 0.0 Not detected
Salivary gland 0.0 Not detected
Skeletal muscle 0.0 Not detected
Smooth muscle 0.0 Not detected
Tonsil 0.0 Not detected
Urinary bladder 0.0 Not detected
Cell Line Expression
Cell Line nTPM Notes
HeLa 0.0 Not detected
HEK 293 0.0 Not detected
K562 0.0 Not detected
MCF7 0.0 Not detected
A549 0.0 Not detected
HepG2 0.0 Not detected
SH-SY5Y 0.0 Not detected
THP-1 0.0 Not detected
U2OS 0.0 Not detected
Jurkat 0.0 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
CDH11-USP6 fusion Gene fusion Common in ABC Overexpression of USP6, leading to oncogenic signaling
MYH9-USP6 fusion Gene fusion Common in nodular fasciitis Overexpression of USP6, promoting myofibroblastic proliferation
COL1A1-USP6 fusion Gene fusion Rare Overexpression of USP6
TRAP150-USP6 fusion Gene fusion Rare Overexpression of USP6
USP6 amplification Copy number gain Rare Increased USP6 expression
Mutation functional classification

Loss of Function (LOF)

Not applicable; USP6 is an oncogene activated by overexpression, not loss-of-function.

Gain of Function (GOF)

USP6 gene fusions and amplifications result in gain-of-function through overexpression of the deubiquitinase, leading to increased cell proliferation and tumorigenesis.

Dominant Negative (DN)

Not reported for USP6.

Pathways

Ubiquitin-proteasome system
RANKL signaling (osteoclastogenesis)
MAPK signaling (via USP6-mediated stabilization of signaling intermediates)

Protein Summary

USP6 (Ubiquitin Specific Peptidase 6) is a 1406-amino acid deubiquitinating enzyme that cleaves ubiquitin from target proteins, thereby preventing their proteasomal degradation. It contains an N-terminal Tre2 domain and a C-terminal catalytic USP domain. USP6 is normally expressed at very low levels in most adult tissues, but is highly overexpressed in certain tumors due to promoter swapping from gene fusions. Overexpressed USP6 stabilizes proteins involved in cell growth and osteoclast differentiation, such as MMP9 and NFATc1, contributing to the pathogenesis of aneurysmal bone cyst and nodular fasciitis.

Related Products

Product name Cat.No. Species Gene ID
DUSP6 Knockout HEK293 Cell Line EDJ-KQ646 Human 1848 Details Get a Quote
USP6 Knockout HEK293 Cell Line EDJ-KQ6459 Human 9098 Details Get a Quote
USP6NL Knockout HEK293 Cell Line EDJ-KQ6709 Human 9712 Details Get a Quote
DUSP6 Knockout HCT 116 Cell Line EDJ-KQ18074 Human 1848 Details Get a Quote
DUSP6 Knockout A-549 Cell Line EDJ-KQ19132 Human 1848 Details Get a Quote
DUSP6 Knockout HeLa Cell Line EDJ-KQ19134 Human 1848 Details Get a Quote
USP6NL Knockout A-549 Cell Line EDJ-KQ31074 Human 9712 Details Get a Quote
USP6NL Knockout HCT 116 Cell Line EDJ-KQ31075 Human 9712 Details Get a Quote
USP6NL Knockout HeLa Cell Line EDJ-KQ31076 Human 9712 Details Get a Quote
USP6 Knockout HeLa Cell Line EDJ-KQ55085 Human 9098 Details Get a Quote
USP6 Knockout A-549 Cell Line EDJ-KQ63564 Human 9098 Details Get a Quote
USP6 Knockout HCT 116 Cell Line EDJ-KQ72032 Human 9098 Details Get a Quote
Displaying Records 1 To 12 Of 12 Records
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