TRAF1 Gene: Structure, Function, and Clinical Significance

A comprehensive overview of the TNF receptor-associated factor 1 gene, its protein product, expression patterns, and role in disease.

Gene Information Card

Symbol TRAF1
Full Name TNF receptor-associated factor 1
Gene Type protein coding
Chromosomal Location 9q33.2
NCBI Gene ID 7185 ncbi.nlm.nih.gov/gene/7185
Ensembl ID ENSG00000056558
UniProt ID Q13077
OMIM ID 601711
HGNC ID 12016
Aliases EBV-induced protein 6 (EBI6), MGC:10353

Description

TRAF1 (TNF receptor-associated factor 1) encodes a member of the TNF receptor-associated factor (TRAF) protein family. TRAF proteins are adaptor proteins that regulate signal transduction from various TNF receptor superfamily members and Toll-like receptors. TRAF1 is unique among TRAFs as it lacks the N-terminal RING finger domain and instead contains a single zinc finger domain. It interacts with TRAF2 to form heterodimeric complexes that modulate NF-kappa-B and JNK signaling pathways. TRAF1 is primarily expressed in spleen, thymus, and activated lymphocytes, and plays a role in the regulation of apoptosis and inflammation. It is also involved in the immune response to viral infections, particularly Epstein-Barr virus (EBV).

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Rheumatoid Arthritis TRAF1 polymorphisms are associated with increased risk; TRAF1 modulates TNF-alpha signaling and inflammation. GWAS and case-control studies (e.g., Plenge et al., 2007; Kurreeman et al., 2007)
Lymphoma (e.g., diffuse large B-cell lymphoma) TRAF1 is overexpressed in EBV-associated lymphomas; it promotes cell survival via NF-kappa-B activation. Immunohistochemistry and expression studies (e.g., Durkop et al., 2003)
Autoimmune diseases (e.g., systemic lupus erythematosus) TRAF1 variants may influence immune cell signaling and autoantibody production. Genetic association studies (e.g., Namjou et al., 2011)
Inflammatory bowel disease (Crohn's disease) TRAF1 is implicated in TNF signaling pathways that drive intestinal inflammation. Genetic association and functional studies (e.g., Jostins et al., 2012)

Expression Profile

Tissue Expression
Tissue nTPM level
Spleen 12.3 High
Thymus 8.7 Medium
Lymph node 7.5 Medium
Bone marrow 5.2 Low
Lung 2.1 Low
Liver 0.8 Not detected
Cell Line Expression
Cell Line nTPM Notes
Ramos (B lymphocyte) 15.4 High expression; EBV-transformed
Jurkat (T lymphocyte) 9.8 Moderate expression; activated T cell line
HeLa (cervical carcinoma) 3.2 Low expression
A549 (lung carcinoma) 1.5 Very low expression
HepG2 (hepatocellular carcinoma) 0.4 Not expressed
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
rs10818488 (intronic variant) SNP ~30% allele frequency in European populations Associated with increased risk of rheumatoid arthritis; may affect TRAF1 expression or splicing.
rs3761847 (intronic variant) SNP ~40% allele frequency Associated with autoimmune diseases; potential regulatory effect.
Somatic mutations in lymphoma Missense/truncating Rare (<5% in DLBCL) May alter TRAF1 function, contributing to NF-kappa-B dysregulation.
Mutation functional classification

Loss of Function (LOF)

Complete loss of TRAF1 function is rare; knockout mice show impaired T cell responses and reduced inflammation, but no major developmental defects.

Gain of Function (GOF)

Overexpression of TRAF1, often due to EBV infection or genomic amplification, enhances NF-kappa-B signaling and promotes cell survival in lymphomas.

Dominant Negative (DN)

TRAF1 lacking the TRAF domain can act as a dominant-negative inhibitor of TRAF2-mediated signaling, but such mutations are not commonly observed in human disease.

Gene Ontology (GO)

• protein binding • signal transducer activity
• zinc ion binding • TNF receptor binding
• ubiquitin protein ligase binding • cytoplasm
• cytosol • plasma membrane
• TRAF2-TRAF1 complex • regulation of NF-kappaB signaling
• JNK cascade • apoptotic process
• immune response • inflammatory response

Pathways

TNF signaling pathway (KEGG: hsa04668)
NF-kappa B signaling pathway (KEGG: hsa04064)
Toll-like receptor signaling pathway (KEGG: hsa04620)
RIG-I-like receptor signaling pathway (KEGG: hsa04622)
Apoptosis (KEGG: hsa04210)

Protein Summary

TRAF1 is a 45 kDa protein composed of 416 amino acids. It contains a C-terminal TRAF domain that mediates self-association and interaction with receptors, and a single N-terminal zinc finger domain. Unlike other TRAFs, it lacks a RING finger domain, making it catalytically inactive as an E3 ubiquitin ligase. TRAF1 forms heterodimers with TRAF2, modulating the recruitment of downstream signaling molecules such as IKK and JNK. It is predominantly expressed in lymphoid tissues and is induced by NF-kappa-B activation. TRAF1 plays a dual role in apoptosis: it can inhibit TNF-induced apoptosis by promoting NF-kappa-B survival signals, but also can promote apoptosis in certain contexts. Its expression is upregulated in various cancers and inflammatory diseases, making it a potential therapeutic target.

Related Products

Product name Cat.No. Species Gene ID
TRAF1 Knockout HEK293 Cell Line EDJ-KQ600 Human 7185 Details Get a Quote
ZFTRAF1 Knockout HEK293 Cell Line EDJ-KQ17472 Human 50626 Details Get a Quote
TRAF1 Knockout A-549 Cell Line EDJ-KQ18037 Human 7185 Details Get a Quote
TRAF1 Knockout HeLa Cell Line EDJ-KQ18305 Human 7185 Details Get a Quote
ZFTRAF1 Knockout A-549 Cell Line EDJ-KQ49690 Human 50626 Details Get a Quote
ZFTRAF1 Knockout HCT 116 Cell Line EDJ-KQ49691 Human 50626 Details Get a Quote
ZFTRAF1 Knockout HeLa Cell Line EDJ-KQ49692 Human 50626 Details Get a Quote
TRAF1 Knockout HCT 116 Cell Line EDJ-KQ71647 Human 7185 Details Get a Quote
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