TNF Gene - Tumor Necrosis Factor Alpha
Key cytokine in inflammation, immune regulation, and disease pathogenesis
Gene Information Card
| Symbol | TNF |
|---|---|
| Full Name | Tumor Necrosis Factor |
| Gene Type | Protein coding |
| Chromosomal Location | 6p21.33 |
| NCBI Gene ID | 7124 ncbi.nlm.nih.gov/gene/7124 |
| Ensembl ID | ENSG00000232810 |
| UniProt ID | P01375 |
| OMIM ID | 191160 |
| HGNC ID | 11892 |
| Aliases | TNF-alpha, TNFA, TNFSF2, DIF, Cachectin |
Description
The TNF gene encodes tumor necrosis factor-alpha (TNF-α), a multifunctional proinflammatory cytokine belonging to the tumor necrosis factor superfamily. It is primarily produced by activated macrophages, lymphocytes, and other immune cells. TNF-α exists as a transmembrane protein that is cleaved by ADAM17 to release a soluble form. It signals through TNF receptors (TNFR1 and TNFR2) to regulate inflammation, immune responses, apoptosis, and cell proliferation. Dysregulation of TNF is implicated in autoimmune diseases, cancer, and infectious diseases.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Rheumatoid Arthritis | TNF-α promotes synovial inflammation and joint destruction via NF-κB activation and matrix metalloproteinase induction. | ClinVar, OMIM |
| Inflammatory Bowel Disease (Crohn's disease, Ulcerative colitis) | Elevated TNF-α in intestinal mucosa drives chronic inflammation and tissue damage. | ClinVar, OMIM |
| Ankylosing Spondylitis | TNF-α contributes to inflammation of the axial skeleton and entheses. | ClinVar, OMIM |
| Psoriasis | TNF-α stimulates keratinocyte proliferation and inflammatory cell infiltration in skin lesions. | ClinVar, OMIM |
| Sepsis | Excessive TNF-α release during infection leads to systemic inflammatory response syndrome and organ failure. | OMIM, NCBI |
| Cancer-associated cachexia | TNF-α (cachectin) induces muscle wasting and weight loss in chronic disease. | OMIM, NCBI |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Spleen | 12.3 | High |
| Lung | 8.7 | Moderate |
| Bone Marrow | 7.9 | Moderate |
| Liver | 5.2 | Low |
| Brain | 2.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| THP-1 (monocytic leukemia) | 45.6 | High expression; inducible by LPS |
| K-562 (chronic myelogenous leukemia) | 12.3 | Moderate expression |
| HeLa (cervical carcinoma) | 3.4 | Low expression |
| A549 (lung carcinoma) | 2.8 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs1800629 (-308G>A) | SNP (promoter) | 10-20% in Caucasian populations | Associated with increased TNF-α production and susceptibility to autoimmune diseases |
| rs361525 (-238G>A) | SNP (promoter) | 5-10% in various populations | Linked to altered TNF-α levels and disease risk |
| rs1799724 (-857C>T) | SNP (promoter) | 10-15% in Asian populations | May affect TNF-α expression and inflammatory disease susceptibility |
| Missense variants (e.g., p.Leu75Pro) | Missense | Rare | Potential impact on protein stability and function; clinical significance uncertain |
Mutation functional classification
Loss of Function (LOF)
Rare loss-of-function mutations in TNF are associated with impaired immune responses and increased susceptibility to infections, though such variants are uncommon.
Gain of Function (GOF)
Promoter polymorphisms (e.g., -308A) are considered gain-of-function, leading to increased TNF-α transcription and elevated inflammatory responses.
Dominant Negative (DN)
No well-characterized dominant-negative mutations have been reported for TNF; however, some missense variants may exert dominant-negative effects by interfering with trimer formation, but evidence is limited.
View complete mutation data:
Gene Ontology (GO)
| • GO:0005125 - cytokine activity | • GO:0005164 - tumor necrosis factor receptor binding |
| • GO:0006954 - inflammatory response | • GO:0006915 - apoptotic process |
| • GO:0043122 - regulation of I-kappaB kinase/NF-kappaB signaling |
Pathways
• TNF signaling pathway (KEGG hsa04668)
• Cytokine-cytokine receptor interaction (KEGG hsa04060)
• Apoptosis (KEGG hsa04210)
• NF-kappa B signaling pathway (KEGG hsa04064)
• Inflammatory bowel disease (KEGG hsa05321)
Protein Summary
TNF-α is a 233-amino acid type II transmembrane protein (26 kDa) that is cleaved by ADAM17 to produce a soluble 17 kDa form. It forms homotrimers and binds to two receptors: TNFR1 (TNFRSF1A) and TNFR2 (TNFRSF1B). TNFR1 is widely expressed and mediates most proinflammatory and apoptotic signals via TRADD and RIPK1, leading to NF-κB activation or caspase-dependent apoptosis. TNFR2 is mainly found on immune cells and promotes cell survival and proliferation. TNF-α is a key therapeutic target; monoclonal antibodies (e.g., infliximab, adalimumab) and soluble receptor fusion proteins (etanercept) are used to treat autoimmune diseases.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| IL17RD & TNFR2 Overexpression U2OS Stable Cell Line | EDJ-GQ80 | Human | 132014 & 7133 | Details Get a Quote |
| TNFRSF1A Knockout HEK293 Cell Line | EDC90705 | Human | 7132 | Details Get a Quote |
| TNFAIP3 Knockout HEK293 Cell Line | EDJ-KQ595 | Human | 7128 | Details Get a Quote |
| TNFRSF13C Knockout HEK293 Cell Line | EDJ-KQ596 | Human | 115650 | Details Get a Quote |
| TNFSF14 Knockout HEK293 Cell Line | EDJ-KQ597 | Human | 8740 | Details Get a Quote |
| TNFRSF1B Knockout HEK293 Cell Line | EDJ-KQ900 | Human | 7133 | Details Get a Quote |
| C1QTNF4 Knockout HEK293 Cell Line | EDJ-KQ1126 | Human | 114900 | Details Get a Quote |
| TNFRSF13B Knockout HEK293 Cell Line | EDJ-KQ1965 | Human | 23495 | Details Get a Quote |
| TNFRSF19 Knockout HEK293 Cell Line | EDJ-KQ2209 | Human | 55504 | Details Get a Quote |
| TNFSF4 Knockout HEK293 Cell Line | EDJ-KQ2451 | Human | 7292 | Details Get a Quote |
| TNFSF9 Knockout HEK293 Cell Line | EDJ-KQ2815 | Human | 8744 | Details Get a Quote |
| TNFRSF11A Knockout HEK293 Cell Line | EDJ-KQ2841 | Human | 8792 | Details Get a Quote |
| TNFRSF21 Knockout HEK293 Cell Line | EDJ-KQ3295 | Human | 27242 | Details Get a Quote |
| TNFRSF17 Knockout HEK293 Cell Line | EDJ-KQ4130 | Human | 608 | Details Get a Quote |
| TNFSF8 Knockout HEK293 Cell Line | EDJ-KQ4218 | Human | 944 | Details Get a Quote |
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