TNF Gene - Tumor Necrosis Factor Alpha

Key cytokine in inflammation, immune regulation, and disease pathogenesis

Gene Information Card

Symbol TNF
Full Name Tumor Necrosis Factor
Gene Type Protein coding
Chromosomal Location 6p21.33
NCBI Gene ID 7124 ncbi.nlm.nih.gov/gene/7124
Ensembl ID ENSG00000232810
UniProt ID P01375
OMIM ID 191160
HGNC ID 11892
Aliases TNF-alpha, TNFA, TNFSF2, DIF, Cachectin

Description

The TNF gene encodes tumor necrosis factor-alpha (TNF-α), a multifunctional proinflammatory cytokine belonging to the tumor necrosis factor superfamily. It is primarily produced by activated macrophages, lymphocytes, and other immune cells. TNF-α exists as a transmembrane protein that is cleaved by ADAM17 to release a soluble form. It signals through TNF receptors (TNFR1 and TNFR2) to regulate inflammation, immune responses, apoptosis, and cell proliferation. Dysregulation of TNF is implicated in autoimmune diseases, cancer, and infectious diseases.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Rheumatoid Arthritis TNF-α promotes synovial inflammation and joint destruction via NF-κB activation and matrix metalloproteinase induction. ClinVar, OMIM
Inflammatory Bowel Disease (Crohn's disease, Ulcerative colitis) Elevated TNF-α in intestinal mucosa drives chronic inflammation and tissue damage. ClinVar, OMIM
Ankylosing Spondylitis TNF-α contributes to inflammation of the axial skeleton and entheses. ClinVar, OMIM
Psoriasis TNF-α stimulates keratinocyte proliferation and inflammatory cell infiltration in skin lesions. ClinVar, OMIM
Sepsis Excessive TNF-α release during infection leads to systemic inflammatory response syndrome and organ failure. OMIM, NCBI
Cancer-associated cachexia TNF-α (cachectin) induces muscle wasting and weight loss in chronic disease. OMIM, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Spleen 12.3 High
Lung 8.7 Moderate
Bone Marrow 7.9 Moderate
Liver 5.2 Low
Brain 2.1 Low
Cell Line Expression
Cell Line nTPM Notes
THP-1 (monocytic leukemia) 45.6 High expression; inducible by LPS
K-562 (chronic myelogenous leukemia) 12.3 Moderate expression
HeLa (cervical carcinoma) 3.4 Low expression
A549 (lung carcinoma) 2.8 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
rs1800629 (-308G>A) SNP (promoter) 10-20% in Caucasian populations Associated with increased TNF-α production and susceptibility to autoimmune diseases
rs361525 (-238G>A) SNP (promoter) 5-10% in various populations Linked to altered TNF-α levels and disease risk
rs1799724 (-857C>T) SNP (promoter) 10-15% in Asian populations May affect TNF-α expression and inflammatory disease susceptibility
Missense variants (e.g., p.Leu75Pro) Missense Rare Potential impact on protein stability and function; clinical significance uncertain
Mutation functional classification

Loss of Function (LOF)

Rare loss-of-function mutations in TNF are associated with impaired immune responses and increased susceptibility to infections, though such variants are uncommon.

Gain of Function (GOF)

Promoter polymorphisms (e.g., -308A) are considered gain-of-function, leading to increased TNF-α transcription and elevated inflammatory responses.

Dominant Negative (DN)

No well-characterized dominant-negative mutations have been reported for TNF; however, some missense variants may exert dominant-negative effects by interfering with trimer formation, but evidence is limited.

Gene Ontology (GO)

• GO:0005125 - cytokine activity • GO:0005164 - tumor necrosis factor receptor binding
• GO:0006954 - inflammatory response • GO:0006915 - apoptotic process
• GO:0043122 - regulation of I-kappaB kinase/NF-kappaB signaling

Pathways

TNF signaling pathway (KEGG hsa04668)
Cytokine-cytokine receptor interaction (KEGG hsa04060)
Apoptosis (KEGG hsa04210)
NF-kappa B signaling pathway (KEGG hsa04064)
Inflammatory bowel disease (KEGG hsa05321)

Protein Summary

TNF-α is a 233-amino acid type II transmembrane protein (26 kDa) that is cleaved by ADAM17 to produce a soluble 17 kDa form. It forms homotrimers and binds to two receptors: TNFR1 (TNFRSF1A) and TNFR2 (TNFRSF1B). TNFR1 is widely expressed and mediates most proinflammatory and apoptotic signals via TRADD and RIPK1, leading to NF-κB activation or caspase-dependent apoptosis. TNFR2 is mainly found on immune cells and promotes cell survival and proliferation. TNF-α is a key therapeutic target; monoclonal antibodies (e.g., infliximab, adalimumab) and soluble receptor fusion proteins (etanercept) are used to treat autoimmune diseases.

Related Products

Product name Cat.No. Species Gene ID
IL17RD & TNFR2  Overexpression U2OS Stable Cell Line EDJ-GQ80 Human 132014 & 7133 Details Get a Quote
TNFRSF1A Knockout HEK293 Cell Line EDC90705 Human 7132 Details Get a Quote
TNFAIP3 Knockout HEK293 Cell Line EDJ-KQ595 Human 7128 Details Get a Quote
TNFRSF13C Knockout HEK293 Cell Line EDJ-KQ596 Human 115650 Details Get a Quote
TNFSF14 Knockout HEK293 Cell Line EDJ-KQ597 Human 8740 Details Get a Quote
TNFRSF1B Knockout HEK293 Cell Line EDJ-KQ900 Human 7133 Details Get a Quote
C1QTNF4 Knockout HEK293 Cell Line EDJ-KQ1126 Human 114900 Details Get a Quote
TNFRSF13B Knockout HEK293 Cell Line EDJ-KQ1965 Human 23495 Details Get a Quote
TNFRSF19 Knockout HEK293 Cell Line EDJ-KQ2209 Human 55504 Details Get a Quote
TNFSF4 Knockout HEK293 Cell Line EDJ-KQ2451 Human 7292 Details Get a Quote
TNFSF9 Knockout HEK293 Cell Line EDJ-KQ2815 Human 8744 Details Get a Quote
TNFRSF11A Knockout HEK293 Cell Line EDJ-KQ2841 Human 8792 Details Get a Quote
TNFRSF21 Knockout HEK293 Cell Line EDJ-KQ3295 Human 27242 Details Get a Quote
TNFRSF17 Knockout HEK293 Cell Line EDJ-KQ4130 Human 608 Details Get a Quote
TNFSF8 Knockout HEK293 Cell Line EDJ-KQ4218 Human 944 Details Get a Quote
Displaying Records 1 To 15 Of 230 Records
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