ST6GALNAC4: ST6 N-Acetylgalactosaminide Alpha-2,6-Sialyltransferase 4
Key enzyme in sialyl-Tn antigen synthesis and cancer-associated glycosylation
Gene Information Card
| Symbol | ST6GALNAC4 |
|---|---|
| Full Name | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 |
| Gene Type | protein-coding |
| Chromosomal Location | 9q34.13 |
| NCBI Gene ID | 27090 ncbi.nlm.nih.gov/gene/27090 |
| Ensembl ID | ENSG00000136872 |
| UniProt ID | Q9H4F1 |
| OMIM ID | 609634 |
| HGNC ID | 17868 |
| Aliases | SIAT7D, ST6GalNAcIV, ST6GalNAc4 |
Description
ST6GALNAC4 encodes a Golgi membrane-bound sialyltransferase that catalyzes the transfer of sialic acid from CMP-sialic acid to N-acetylgalactosamine (GalNAc) residues on glycoproteins and glycolipids, forming the sialyl-Tn (STn) antigen (Neu5Acα2-6GalNAcα1-O-Ser/Thr). This enzyme is a member of the ST6GalNAc family and plays a critical role in O-glycan biosynthesis, particularly in cancer-associated aberrant glycosylation. The sialyl-Tn antigen is a well-known tumor-associated carbohydrate antigen expressed in various carcinomas and is linked to poor prognosis.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Colorectal cancer | Overexpression of ST6GALNAC4 leads to increased sialyl-Tn antigen, promoting tumor cell invasion and metastasis | PMID: 23454750 |
| Gastric cancer | Upregulation correlates with sialyl-Tn expression and poor patient survival | PMID: 21947082 |
| Breast cancer | ST6GALNAC4-mediated sialyl-Tn synthesis enhances cancer cell migration and immune evasion | PMID: 28397838 |
| Pancreatic cancer | Elevated ST6GALNAC4 expression associated with aggressive tumor phenotype | PMID: 25636873 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Colon | 12.5 | Medium |
| Stomach | 8.3 | Low |
| Breast | 6.1 | Low |
| Pancreas | 4.7 | Low |
| Liver | 2.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 15.2 | Cervical cancer cell line |
| MCF7 | 9.8 | Breast cancer cell line |
| HT-29 | 22.4 | Colorectal adenocarcinoma cell line |
| KATO III | 18.7 | Gastric carcinoma cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.104G>A (p.Arg35Gln) | Missense | <0.1% | Unknown functional impact |
| c.487C>T (p.Arg163Trp) | Missense | <0.1% | Potential loss of enzyme activity |
Mutation functional classification
Loss of Function (LOF)
Missense mutations (e.g., p.Arg163Trp) may reduce sialyltransferase activity, altering O-glycan profiles.
Gain of Function (GOF)
Not reported in literature.
Dominant Negative (DN)
Not reported in literature.
View complete mutation data:
Gene Ontology (GO)
| • sialyltransferase activity (GO:0008373) | • Golgi apparatus (GO:0005794) |
| • glycosyltransferase activity (GO:0016757) | • protein glycosylation (GO:0006486) |
| • O-glycan processing (GO:0016266) |
Pathways
• KEGG: Glycosphingolipid biosynthesis - lacto and neolacto series (hsa00601)
• KEGG: Mucin type O-glycan biosynthesis (hsa00512)
• Reactome: O-linked glycosylation (R-HSA-5173105)
Protein Summary
ST6GALNAC4 is a type II transmembrane protein localized to the Golgi apparatus. It contains a short N-terminal cytoplasmic tail, a transmembrane domain, and a large C-terminal catalytic domain facing the Golgi lumen. The enzyme specifically adds sialic acid in an α2-6 linkage to GalNAc residues on O-glycans, generating the sialyl-Tn epitope. This modification is often upregulated in cancer and contributes to tumor progression, immune evasion, and metastasis. The protein is encoded by 9 exons and has a molecular weight of approximately 40 kDa.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ST6GALNAC4 Knockout HEK293 Cell Line | EDJ-KQ8675 | Human | 27090 | Details Get a Quote |
| ST6GALNAC4 Knockout A-549 Cell Line | EDJ-KQ34866 | Human | 27090 | Details Get a Quote |
| ST6GALNAC4 Knockout HCT 116 Cell Line | EDJ-KQ34867 | Human | 27090 | Details Get a Quote |
| ST6GALNAC4 Knockout HeLa Cell Line | EDJ-KQ34868 | Human | 27090 | Details Get a Quote |
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