SOX5 Gene: SRY-Box Transcription Factor 5
Key regulator of chondrogenesis, neurodevelopment, and cell fate determination
Gene Information Card
| Symbol | SOX5 |
|---|---|
| Full Name | SRY-box transcription factor 5 |
| Gene Type | protein-coding |
| Chromosomal Location | 12p12.1 |
| NCBI Gene ID | 6660 ncbi.nlm.nih.gov/gene/6660 |
| Ensembl ID | ENSG00000134532 |
| UniProt ID | P35711 |
| OMIM ID | 604975 |
| HGNC ID | 11201 |
| Aliases | L-SOX5, SOX5_HUMAN, SRY-related HMG-box gene 5 |
Description
SOX5 encodes a member of the SOX (SRY-related HMG-box) family of transcription factors, characterized by a conserved high-mobility group (HMG) DNA-binding domain. SOX5 plays critical roles in embryonic development, particularly in chondrogenesis (cartilage formation) and neurogenesis. It acts as a transcriptional activator or repressor depending on context and partner proteins. Mutations in SOX5 are associated with Lamb-Shaffer syndrome (LAMSHF), a neurodevelopmental disorder characterized by intellectual disability, speech delay, and facial dysmorphism. SOX5 is also implicated in several cancers, including glioblastoma and melanoma, where it can promote tumor progression.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Lamb-Shaffer syndrome (LAMSHF) | Haploinsufficiency of SOX5 due to heterozygous loss-of-function mutations or deletions leads to impaired neurodevelopment and craniofacial abnormalities. | ClinVar, OMIM #616803 |
| Intellectual disability, autosomal dominant 32 | De novo missense or nonsense mutations in SOX5 disrupt DNA binding and transcriptional activity, causing cognitive impairment. | ClinVar, OMIM #604975 |
| Glioblastoma | SOX5 overexpression promotes glioma cell proliferation and invasion via regulation of target genes involved in cell cycle and migration. | COSMIC, PubMed studies |
| Melanoma | SOX5 acts as a lineage-specific oncogene, driving melanoma cell proliferation and metastasis by modulating MITF and other targets. | COSMIC, PubMed studies |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Testis | 8.3 | Medium |
| Lung | 4.1 | Low |
| Heart | 3.2 | Low |
| Liver | 1.0 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 15.2 | High expression; used in neurodevelopment studies |
| U87MG (glioblastoma) | 22.8 | Overexpressed; associated with tumor aggressiveness |
| A375 (melanoma) | 18.5 | High expression; lineage-specific oncogene |
| HEK293 (embryonic kidney) | 6.7 | Moderate expression; common model for recombinant studies |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1018C>T (p.Arg340*) | Nonsense | Rare | Loss of function; truncation of protein; associated with LAMSHF |
| c.1246G>A (p.Gly416Arg) | Missense | Rare | Loss of function; impaired DNA binding; intellectual disability |
| c.1432_1433del (p.Leu478fs) | Frameshift | Rare | Loss of function; premature termination; LAMSHF |
| Amplification (12p12.1) | Copy number gain | Frequent in glioblastoma | Gain of function; increased SOX5 expression; tumor progression |
Mutation functional classification
Loss of Function (LOF)
Nonsense, frameshift, and missense mutations that reduce or abolish SOX5 DNA-binding or transactivation activity; cause Lamb-Shaffer syndrome and intellectual disability.
Gain of Function (GOF)
Gene amplification or overexpression in cancers (glioblastoma, melanoma) leading to enhanced transcriptional activity and oncogenic signaling.
Dominant Negative (DN)
Not well documented; some missense variants may interfere with wild-type SOX5 function in heterodimers, but evidence is limited.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Chondrogenesis and skeletal development (Reactome: R-HSA-5619507)
• SOX-mediated regulation of neural crest cell migration (Reactome: R-HSA-5619508)
• Transcriptional regulation by SOX5 in glioblastoma (KEGG: hsa05214)
• Melanogenesis and MITF regulation (KEGG: hsa04916)
Protein Summary
SOX5 is a 763-amino acid transcription factor containing an N-terminal HMG box DNA-binding domain, a coiled-coil dimerization domain, and a C-terminal transactivation domain. It binds DNA as a monomer or dimer and interacts with partner transcription factors (e.g., SOX6, SOX9) to regulate target genes. SOX5 is essential for chondrogenesis, where it cooperates with SOX6 and SOX9 to activate collagen type II and aggrecan expression. In the nervous system, it controls neuronal migration and differentiation. Post-translational modifications include phosphorylation and sumoylation, which modulate its activity and stability.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SOX5 Knockout HEK293 Cell Line | EDJ-KQ5823 | Human | 6660 | Details Get a Quote |
| SOX5 Knockout HeLa Cell Line | EDJ-KQ54538 | Human | 6660 | Details Get a Quote |
| SOX5 Knockout A-549 Cell Line | EDJ-KQ63022 | Human | 6660 | Details Get a Quote |
| SOX5 Knockout HCT 116 Cell Line | EDJ-KQ71498 | Human | 6660 | Details Get a Quote |