SLC52A3
Solute Carrier Family 52 Member 3
Gene Information Card
| Symbol | SLC52A3 |
|---|---|
| Full Name | Solute Carrier Family 52 Member 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 20p13 |
| NCBI Gene ID | 113278 ncbi.nlm.nih.gov/gene/113278 |
| Ensembl ID | ENSG00000101276 |
| UniProt ID | Q9NQ40 |
| OMIM ID | 613350 |
| HGNC ID | 16187 |
| Aliases | bA371L19.1, C20orf54, FLJ10060, RFVT3, hRFT3 |
Description
SLC52A3 (Solute Carrier Family 52 Member 3) encodes a transmembrane protein that functions as a riboflavin (vitamin B2) transporter. It mediates cellular uptake of riboflavin, which is essential for the synthesis of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD), cofactors for numerous redox enzymes. The gene is located on chromosome 20p13 and is expressed in various tissues, including small intestine, placenta, and brain. Mutations in SLC52A3 cause Brown-Vialetto-Van Laere syndrome (BVVLS), a rare neurological disorder characterized by sensorineural deafness, pontobulbar palsy, and respiratory insufficiency.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Brown-Vialetto-Van Laere syndrome (BVVLS) | Loss-of-function mutations impair riboflavin transport, leading to reduced FMN/FAD synthesis and mitochondrial dysfunction in motor neurons. | ClinVar, OMIM |
| Riboflavin transporter deficiency | Biallelic pathogenic variants cause systemic riboflavin deficiency, manifesting as neuropathy and sensory ataxia. | ClinVar, OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Small intestine | 12.5 | Medium |
| Placenta | 10.2 | Medium |
| Brain | 6.8 | Low |
| Liver | 4.3 | Low |
| Kidney | 3.9 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Caco-2 (intestinal) | 15.0 | High expression |
| SH-SY5Y (neuronal) | 8.5 | Moderate expression |
| HepG2 (liver) | 5.2 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.958C>T (p.Arg320*) | Nonsense | Rare | Loss of function; truncated protein |
| c.1124G>A (p.Arg375Gln) | Missense | Rare | Impaired riboflavin transport activity |
| c.1169A>G (p.Asn390Ser) | Missense | Rare | Reduced cell surface expression |
Mutation functional classification
Loss of Function (LOF)
Most pathogenic mutations result in loss of riboflavin transport activity, leading to cellular riboflavin deficiency.
Gain of Function (GOF)
No gain-of-function mutations reported.
Dominant Negative (DN)
Not described; disease is typically autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
| • GO:0032217 - riboflavin transmembrane transporter activity | • GO:0032218 - riboflavin transport |
| • GO:0015882 - riboflavin uptake | • GO:0016021 - integral component of membrane |
Pathways
• Riboflavin metabolism (Reactome: R-HSA-196836)
• Vitamin B2 (riboflavin) transport (Reactome: R-HSA-196819)
Protein Summary
SLC52A3 encodes a 469-amino acid protein with 11 transmembrane domains, belonging to the SLC52 family of riboflavin transporters. It localizes to the plasma membrane and mediates high-affinity riboflavin uptake in a sodium-independent manner. The protein is essential for maintaining intracellular flavin levels, particularly in tissues with high metabolic demand such as the nervous system. Defects in this transporter lead to impaired FMN and FAD synthesis, disrupting mitochondrial electron transport chain function and causing neurodegeneration.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLC52A3 Knockout HEK293 Cell Line | EDJ-KQ7418 | Human | 113278 | Details Get a Quote |
| SLC52A3 Knockout A-549 Cell Line | EDJ-KQ32603 | Human | 113278 | Details Get a Quote |
| SLC52A3 Knockout HCT 116 Cell Line | EDC07753 | Human | 113278 | Details Get a Quote |
| SLC52A3 Knockout HeLa Cell Line | EDJ-KQ57906 | Human | 113278 | Details Get a Quote |
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