SLC52A3

Solute Carrier Family 52 Member 3

Gene Information Card

Symbol SLC52A3
Full Name Solute Carrier Family 52 Member 3
Gene Type Protein coding
Chromosomal Location 20p13
NCBI Gene ID 113278 ncbi.nlm.nih.gov/gene/113278
Ensembl ID ENSG00000101276
UniProt ID Q9NQ40
OMIM ID 613350
HGNC ID 16187
Aliases bA371L19.1, C20orf54, FLJ10060, RFVT3, hRFT3

Description

SLC52A3 (Solute Carrier Family 52 Member 3) encodes a transmembrane protein that functions as a riboflavin (vitamin B2) transporter. It mediates cellular uptake of riboflavin, which is essential for the synthesis of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD), cofactors for numerous redox enzymes. The gene is located on chromosome 20p13 and is expressed in various tissues, including small intestine, placenta, and brain. Mutations in SLC52A3 cause Brown-Vialetto-Van Laere syndrome (BVVLS), a rare neurological disorder characterized by sensorineural deafness, pontobulbar palsy, and respiratory insufficiency.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Brown-Vialetto-Van Laere syndrome (BVVLS) Loss-of-function mutations impair riboflavin transport, leading to reduced FMN/FAD synthesis and mitochondrial dysfunction in motor neurons. ClinVar, OMIM
Riboflavin transporter deficiency Biallelic pathogenic variants cause systemic riboflavin deficiency, manifesting as neuropathy and sensory ataxia. ClinVar, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Small intestine 12.5 Medium
Placenta 10.2 Medium
Brain 6.8 Low
Liver 4.3 Low
Kidney 3.9 Low
Cell Line Expression
Cell Line nTPM Notes
Caco-2 (intestinal) 15.0 High expression
SH-SY5Y (neuronal) 8.5 Moderate expression
HepG2 (liver) 5.2 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.958C>T (p.Arg320*) Nonsense Rare Loss of function; truncated protein
c.1124G>A (p.Arg375Gln) Missense Rare Impaired riboflavin transport activity
c.1169A>G (p.Asn390Ser) Missense Rare Reduced cell surface expression
Mutation functional classification

Loss of Function (LOF)

Most pathogenic mutations result in loss of riboflavin transport activity, leading to cellular riboflavin deficiency.

Gain of Function (GOF)

No gain-of-function mutations reported.

Dominant Negative (DN)

Not described; disease is typically autosomal recessive.

Gene Ontology (GO)

• GO:0032217 - riboflavin transmembrane transporter activity • GO:0032218 - riboflavin transport
• GO:0015882 - riboflavin uptake • GO:0016021 - integral component of membrane

Pathways

Riboflavin metabolism (Reactome: R-HSA-196836)
Vitamin B2 (riboflavin) transport (Reactome: R-HSA-196819)

Protein Summary

SLC52A3 encodes a 469-amino acid protein with 11 transmembrane domains, belonging to the SLC52 family of riboflavin transporters. It localizes to the plasma membrane and mediates high-affinity riboflavin uptake in a sodium-independent manner. The protein is essential for maintaining intracellular flavin levels, particularly in tissues with high metabolic demand such as the nervous system. Defects in this transporter lead to impaired FMN and FAD synthesis, disrupting mitochondrial electron transport chain function and causing neurodegeneration.

Related Products

Product name Cat.No. Species Gene ID
SLC52A3 Knockout HEK293 Cell Line EDJ-KQ7418 Human 113278 Details Get a Quote
SLC52A3 Knockout A-549 Cell Line EDJ-KQ32603 Human 113278 Details Get a Quote
SLC52A3 Knockout HCT 116 Cell Line EDC07753 Human 113278 Details Get a Quote
SLC52A3 Knockout HeLa Cell Line EDJ-KQ57906 Human 113278 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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