SKAP1: Src Kinase Associated Phosphoprotein 1
A key adaptor protein in T-cell receptor signaling and immune synapse formation
Gene Information Card
| Symbol | SKAP1 |
|---|---|
| Full Name | Src kinase associated phosphoprotein 1 |
| Gene Type | protein-coding |
| Chromosomal Location | 17q21.32 |
| NCBI Gene ID | 8631 ncbi.nlm.nih.gov/gene/8631 |
| Ensembl ID | ENSG00000137692 |
| UniProt ID | Q86WV1 |
| OMIM ID | 605395 |
| HGNC ID | 20239 |
| Aliases | SKAP55, SKAP-1, SKAP55R |
Description
SKAP1 (Src kinase associated phosphoprotein 1) encodes an adaptor protein that functions downstream of T-cell receptor (TCR) activation. It contains a pleckstrin homology (PH) domain and a Src homology 3 (SH3) domain, mediating interactions with signaling molecules such as FYN, LCP2, and ADAP. SKAP1 is essential for integrin activation, cytoskeletal rearrangement, and immune synapse formation in T cells.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| T-cell immunodeficiency | Impaired TCR signaling and integrin activation due to SKAP1 deficiency | Mouse models; human case reports (PMID: 19124723) |
| Autoimmune lymphoproliferative syndrome (ALPS)-like disorder | Dysregulation of T-cell activation and apoptosis | Rare variant association (ClinVar) |
| Cancer (lymphoma, leukemia) | Altered SKAP1 expression may affect T-cell antitumor responses | COSMIC somatic mutation data |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lymph node | 12.5 | High |
| Spleen | 10.8 | High |
| Thymus | 9.2 | High |
| Bone marrow | 6.1 | Medium |
| Peripheral blood leukocytes | 5.4 | Medium |
| Lung | 1.2 | Low |
| Brain | 0.3 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Jurkat (T-cell leukemia) | 15.3 | High expression; model for TCR signaling |
| Raji (Burkitt lymphoma) | 2.1 | Low expression |
| HEK293 (embryonic kidney) | 0.8 | Not detected |
| K562 (chronic myeloid leukemia) | 1.5 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.511C>T (p.Arg171Trp) | Missense | <0.01% | Altered SH3 domain binding (ClinVar) |
| c.784G>A (p.Glu262Lys) | Missense | <0.01% | Unknown functional effect (ClinVar) |
| c.1021_1023del (p.Lys341del) | In-frame deletion | <0.01% | Potential loss of PH domain function (COSMIC) |
Mutation functional classification
Loss of Function (LOF)
Missense mutations in SH3 or PH domains may impair protein-protein interactions and TCR signaling.
Gain of Function (GOF)
Not reported in SKAP1.
Dominant Negative (DN)
Not reported in SKAP1.
View complete mutation data:
Gene Ontology (GO)
| • signal transduction (GO:0007165) | • immunological synapse (GO:0001772) |
| • extrinsic component of cytoplasmic side of plasma membrane (GO:0031234) | • SH3/SH2 adaptor activity (GO:0005070) |
| • membrane raft (GO:0045121) | • regulation of cell adhesion (GO:0030155) |
Pathways
• T-cell receptor signaling pathway (KEGG: hsa04660)
• Integrin signaling pathway (Reactome: R-HSA-354192)
• Adaptor protein interactions in T-cell activation (Reactome: R-HSA-202430)
Protein Summary
SKAP1 (SKAP55) is a 359-amino-acid adaptor protein predominantly expressed in T cells and lymphoid tissues. It contains an N-terminal PH domain that binds phosphatidylinositol lipids, a central SH3 domain that interacts with proline-rich motifs of partners like ADAP and FYN, and a C-terminal region involved in membrane localization. SKAP1 is phosphorylated upon TCR engagement and recruits signaling complexes to the immune synapse, regulating integrin activation (e.g., LFA-1) and T-cell adhesion. Loss of SKAP1 leads to defective T-cell activation and impaired immune responses.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SKAP1 Knockout HEK293 Cell Line | EDJ-KQ1310 | Human | 8631 | Details Get a Quote |
| SKAP1 Knockout HCT 116 Cell Line | EDJ-KQ18062 | Human | 8631 | Details Get a Quote |
| SKAP1 Knockout HeLa Cell Line | EDJ-KQ54960 | Human | 8631 | Details Get a Quote |
| SKAP1 Knockout A-549 Cell Line | EDJ-KQ63443 | Human | 8631 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records