SH2D1A: SH2 Domain Containing 1A
Key regulator of immune cell signaling and X-linked lymphoproliferative disease
Gene Information Card
| Symbol | SH2D1A |
|---|---|
| Full Name | SH2 domain containing 1A |
| Gene Type | protein-coding |
| Chromosomal Location | Xq25 |
| NCBI Gene ID | 4068 ncbi.nlm.nih.gov/gene/4068 |
| Ensembl ID | ENSG00000183918 |
| UniProt ID | O60880 |
| OMIM ID | 300490 |
| HGNC ID | 10820 |
| Aliases | SAP, DSHP, XLP, XLP1, MTCP1 |
Description
SH2D1A encodes the SLAM-associated protein (SAP), a small SH2 domain-containing adaptor protein expressed predominantly in T cells, NK cells, and some B cells. SAP binds to the cytoplasmic tail of SLAM family receptors (e.g., SLAM, CD244, NTB-A) and recruits the tyrosine kinase FYN, thereby modulating immune cell signaling, cytokine production, and cytotoxicity. Loss-of-function mutations in SH2D1A cause X-linked lymphoproliferative disease type 1 (XLP1), characterized by severe immune dysregulation, including fulminant infectious mononucleosis, hypogammaglobulinemia, and lymphoma.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| X-linked lymphoproliferative disease 1 (XLP1) | Loss-of-function mutations impair SAP-mediated signaling via SLAM family receptors, leading to defective T cell and NK cell cytotoxicity, uncontrolled proliferation of EBV-infected B cells, and immune dysregulation. | OMIM #308240; ClinVar; multiple case reports |
| Lymphoma (non-Hodgkin, often B-cell) | Impaired immune surveillance due to SAP deficiency increases susceptibility to EBV-driven lymphoproliferation and lymphoma. | OMIM; COSMIC; literature review |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Spleen | 12.3 | Medium |
| Lymph node | 15.1 | Medium |
| Whole blood | 8.7 | Low |
| Bone marrow | 6.2 | Low |
| Thymus | 9.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| NK-92 (NK cell line) | 45.2 | High expression |
| Jurkat (T cell line) | 38.1 | High expression |
| Raji (B cell line) | 2.3 | Low expression |
| HEK293 (embryonic kidney) | 0.5 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.163C>T (p.Arg55Ter) | Nonsense | ~30% of XLP1 cases | Loss of function; truncated protein |
| c.201_202delAG (p.Glu68GlyfsTer4) | Frameshift deletion | ~10% of XLP1 cases | Loss of function; premature stop |
| c.7G>A (p.Gly3Arg) | Missense | ~5% of XLP1 cases | Loss of function; impaired SH2 domain binding |
| c.265T>C (p.Cys89Arg) | Missense | Rare | Loss of function; disrupts SAP-FYN interaction |
Mutation functional classification
Loss of Function (LOF)
Majority of SH2D1A mutations are loss-of-function, leading to absent or non-functional SAP protein, defective SLAM receptor signaling, and XLP1 phenotype.
Gain of Function (GOF)
No gain-of-function mutations reported in SH2D1A.
Dominant Negative (DN)
No dominant-negative mutations reported; XLP1 is X-linked recessive.
View complete mutation data:
Gene Ontology (GO)
Pathways
• SLAM family signaling pathway (Reactome: R-HSA-2871837)
• FYN-mediated signaling (Reactome: R-HSA-354192)
• NK cell mediated cytotoxicity (KEGG: hsa04650)
• T cell receptor signaling pathway (KEGG: hsa04660)
Protein Summary
The SH2D1A-encoded SAP protein (128 amino acids, ~15 kDa) consists of a single SH2 domain and a short C-terminal tail. It binds with high affinity to tyrosine-phosphorylated motifs in the cytoplasmic tails of SLAM family receptors (SLAM, CD244, NTB-A, CD84, Ly9). SAP recruits the Src family kinase FYN via a unique interaction surface, enabling downstream signaling that regulates T cell and NK cell activation, cytokine production, and cytotoxicity. SAP deficiency leads to impaired immune responses, particularly against EBV, resulting in XLP1.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SH2D1A Knockout HEK293 Cell Line | EDJ-KQ2168 | Human | 4068 | Details Get a Quote |
| SH2D1A Knockout HeLa Cell Line | EDJ-KQ53819 | Human | 4068 | Details Get a Quote |
| SH2D1A Knockout A-549 Cell Line | EDJ-KQ62299 | Human | 4068 | Details Get a Quote |
| SH2D1A Knockout HCT 116 Cell Line | EDJ-KQ70780 | Human | 4068 | Details Get a Quote |