RPSA (Ribosomal Protein SA): Gene, Function, and Clinical Significance

A comprehensive overview of the RPSA gene, its protein product, associated diseases, expression patterns, and mutations.

Gene Information Card

Symbol RPSA
Full Name Ribosomal Protein SA
Gene Type protein coding
Chromosomal Location 3p22.1
NCBI Gene ID 3921 ncbi.nlm.nih.gov/gene/3921
Ensembl ID ENSG00000168028
UniProt ID P08865
OMIM ID 150370
HGNC ID HGNC:6502
Aliases LAMBR, LAMR1, 37/67 kDa laminin receptor, SA, p40

Description

The RPSA gene encodes the ribosomal protein SA, a component of the 40S ribosomal subunit. This protein is also known as the 37/67 kDa laminin receptor (LAMR1) due to its dual function as a cell surface receptor for laminin, a major component of the extracellular matrix. RPSA is involved in protein synthesis and also plays roles in cell adhesion, migration, and tumor metastasis. It has been implicated in various cancers and infectious diseases.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (multiple types) Overexpression of RPSA promotes tumor invasion and metastasis via laminin binding and activation of signaling pathways. COSMIC, PubMed
Prion diseases RPSA acts as a receptor for prion proteins, facilitating cellular uptake and propagation. PubMed
Viral infections Serves as a receptor for several viruses, including Dengue virus and Sindbis virus, mediating entry into host cells. PubMed
Developmental disorders RPSA mutations have been linked to a rare syndrome with intellectual disability and skeletal abnormalities. ClinVar, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Brain High High
Liver High High
Kidney High High
Heart Medium Medium
Lung Medium Medium
Skeletal muscle Low Low
Cell Line Expression
Cell Line nTPM Notes
HeLa High Cervical cancer cell line
MCF7 High Breast cancer cell line
A549 Medium Lung cancer cell line
HepG2 High Liver cancer cell line
K562 Medium Leukemia cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.187C>T (p.Arg63Trp) Missense Rare Associated with intellectual disability and skeletal anomalies
c.446G>A (p.Arg149His) Missense Rare Potential impact on protein function
c.739C>T (p.Arg247Trp) Missense Rare Reported in ClinVar with uncertain significance
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations in RPSA are rare and may lead to haploinsufficiency, affecting ribosomal function and cellular processes.

Gain of Function (GOF)

Gain-of-function mutations are not well characterized; overexpression is more common in cancer.

Dominant Negative (DN)

Dominant-negative effects have not been clearly established for RPSA mutations.

Gene Ontology (GO)

• structural constituent of ribosome • laminin receptor activity
• RNA binding • protein binding
• ribosome biogenesis • cell adhesion
• cell migration • signal transduction

Pathways

• Cytoplasmic ribosomal proteins
• Laminin signaling
• Extracellular matrix organization
• Prion diseases

Protein Summary

The RPSA protein is synthesized as a 295-amino acid precursor (37 kDa) that undergoes post-translational modification to form the mature 67 kDa laminin receptor. It is localized to the cytoplasm as part of the 40S ribosomal subunit, but also exists on the cell surface where it binds laminin and other ligands. The protein is involved in protein synthesis, cell adhesion, and migration. Its overexpression is associated with tumor progression and metastasis.

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