RNMT (RNA Guanine-7 Methyltransferase)

Key regulator of mRNA cap methylation and gene expression

Gene Information Card

Symbol RNMT
Full Name RNA guanine-7 methyltransferase
Gene Type Protein coding
Chromosomal Location 18p11.23
NCBI Gene ID 8731 ncbi.nlm.nih.gov/gene/8731
Ensembl ID ENSG00000101473
UniProt ID O43148
OMIM ID 603514
HGNC ID 10073
Aliases MET, hCMT1, CMT1, MGC104235

Description

The RNMT gene encodes RNA guanine-7 methyltransferase, the enzyme responsible for catalyzing the addition of a methyl group to the N7 position of guanine in the mRNA cap structure. This cap methylation is essential for mRNA stability, nuclear export, and efficient translation. RNMT is a key component of the cap methyltransferase complex and is critical for proper gene expression in eukaryotic cells.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various) Overexpression of RNMT promotes mRNA cap methylation, enhancing translation of oncogenic transcripts NCBI Gene, COSMIC
Developmental disorders Mutations in RNMT may impair cap methylation, leading to altered gene expression OMIM
Intellectual disability Rare variants in RNMT associated with neurodevelopmental phenotypes ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 45.2 High
Brain 32.1 Medium
Liver 28.7 Medium
Heart 22.5 Medium
Lung 18.9 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 35.4 Embryonic kidney
HeLa 30.2 Cervical cancer
HepG2 27.8 Liver cancer
K562 22.1 Leukemia
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G Missense <0.01% Potential loss of function
c.245C>T Nonsense <0.01% Premature truncation
c.678G>A Missense <0.01% Unknown
Mutation functional classification

Loss of Function (LOF)

Rare nonsense and missense variants may reduce methyltransferase activity, impairing mRNA cap methylation.

Gain of Function (GOF)

Not well documented; overexpression in cancer may act as a gain-of-function mechanism.

Dominant Negative (DN)

No evidence currently available.

Pathways

• mRNA Capping (Reactome: R-HSA-77075)
• Gene Expression (Reactome: R-HSA-74160)

Protein Summary

RNMT is a 476-amino acid protein that functions as a monomeric methyltransferase. It uses S-adenosylmethionine (SAM) as a methyl donor to methylate the N7 position of guanine in the mRNA cap. The enzyme is localized primarily in the nucleus and is essential for cell viability. RNMT interacts with the cap-binding complex and is regulated by phosphorylation.

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