PXN (Paxillin) Gene: Structure, Function, and Clinical Significance
A comprehensive biomedical overview of the PXN gene, encoding paxillin, a key focal adhesion adaptor protein involved in cell migration, signaling, and cancer progression.
Gene Information Card
| Symbol | PXN |
|---|---|
| Full Name | Paxillin |
| Gene Type | Protein coding |
| Chromosomal Location | 12q24.23 |
| NCBI Gene ID | 5829 ncbi.nlm.nih.gov/gene/5829 |
| Ensembl ID | ENSG00000089159 |
| UniProt ID | P49023 |
| OMIM ID | 602505 |
| HGNC ID | 9718 |
| Aliases | FLJ16691, paxillin |
Description
The PXN gene encodes paxillin, a 68 kDa focal adhesion adaptor protein that localizes to sites of cell-matrix adhesion. Paxillin functions as a scaffold, integrating signals from integrins and growth factor receptors to regulate cell adhesion, migration, proliferation, and survival. It contains multiple protein interaction domains, including LIM domains and LD motifs, which mediate binding to kinases (e.g., FAK, Src) and other signaling molecules. Dysregulation of PXN expression and phosphorylation is implicated in cancer metastasis, cardiovascular disease, and developmental disorders.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (multiple types) | PXN overexpression and phosphorylation promote focal adhesion turnover, enhancing cell migration and invasion. | NCBI Gene, COSMIC, ClinVar |
| Hepatocellular carcinoma | PXN upregulation correlates with increased FAK signaling and poor prognosis. | NCBI Gene, COSMIC |
| Breast cancer | PXN overexpression linked to metastasis and tamoxifen resistance. | NCBI Gene, COSMIC |
| Lung cancer | PXN amplification and phosphorylation drive invasion. | COSMIC, ClinVar |
| Colorectal cancer | PXN overexpression associated with lymph node metastasis. | NCBI Gene, COSMIC |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lung | 28.5 | Medium |
| Breast | 22.3 | Medium |
| Liver | 18.7 | Medium |
| Colon | 15.2 | Medium |
| Heart | 12.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 35.2 | Cervical cancer cell line |
| A549 | 30.8 | Lung cancer cell line |
| MCF7 | 28.1 | Breast cancer cell line |
| HepG2 | 25.4 | Liver cancer cell line |
| HT-29 | 20.6 | Colorectal cancer cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1015C>T (p.Arg339Trp) | Missense | <0.01% | Unknown; rare variant in ClinVar |
| c.1246G>A (p.Val416Met) | Missense | <0.01% | Unknown; rare variant in ClinVar |
| c.1573G>A (p.Glu525Lys) | Missense | <0.01% | Unknown; rare variant in ClinVar |
| c.1765C>T (p.Pro589Ser) | Missense | <0.01% | Unknown; rare variant in ClinVar |
Mutation functional classification
Loss of Function (LOF)
No well-characterized loss-of-function mutations reported in PXN; complete knockout is likely embryonic lethal in model organisms.
Gain of Function (GOF)
Overexpression and hyperphosphorylation (e.g., at Tyr118) are common in cancers, enhancing cell migration and invasion.
Dominant Negative (DN)
Truncated paxillin isoforms lacking LIM domains can act as dominant negatives, disrupting focal adhesion assembly.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Focal adhesion (KEGG: hsa04510)
• Integrin signaling pathway (Reactome: R-HSA-354192)
• Regulation of actin cytoskeleton (KEGG: hsa04810)
• FAK signaling (Reactome: R-HSA-446353)
• ErbB signaling pathway (KEGG: hsa04012)
Protein Summary
Paxillin is a 591-amino acid adaptor protein with an N-terminal LD motif region and four C-terminal LIM domains. It localizes to focal adhesions, where it binds to FAK, Src, vinculin, and other partners. Phosphorylation at Tyr31 and Tyr118 by FAK and Src creates docking sites for SH2 domain-containing proteins, regulating cell spreading and migration. Paxillin also shuttles to the nucleus to modulate gene expression. Its dysregulation is a hallmark of invasive cancers.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PXN Knockout HEK293 Cell Line | EDJ-KQ1416 | Human | 5829 | Details Get a Quote |
| LPXN Knockout HEK293 Cell Line | EDJ-KQ6579 | Human | 9404 | Details Get a Quote |
| PXN Knockout HCT 116 Cell Line | EDJ-KQ20954 | Human | 5829 | Details Get a Quote |
| PXN Knockout HeLa Cell Line | EDJ-KQ20955 | Human | 5829 | Details Get a Quote |
| PXN Knockout A-549 Cell Line | EDJ-KQ19615 | Human | 5829 | Details Get a Quote |
| LPXN Knockout A-549 Cell Line | EDJ-KQ30793 | Human | 9404 | Details Get a Quote |
| LPXN Knockout HCT 116 Cell Line | EDJ-KQ30794 | Human | 9404 | Details Get a Quote |
| LPXN Knockout HeLa Cell Line | EDJ-KQ30795 | Human | 9404 | Details Get a Quote |
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