PURA Gene: Transcriptional Activator and RNA Binding Protein

Comprehensive biomedical resource for PURA gene, associated with PURA syndrome and neurodevelopmental disorders.

Gene Information Card

Symbol PURA
Full Name purine rich element binding protein A
Gene Type protein coding
Chromosomal Location 5q31.2
NCBI Gene ID 5813 ncbi.nlm.nih.gov/gene/5813
Ensembl ID ENSG00000130176
UniProt ID Q00577
OMIM ID 600473
HGNC ID 9071
Aliases PUR1, PURA1, PURB, PUR-alpha

Description

The PURA gene encodes a highly conserved DNA- and RNA-binding protein that functions as a transcriptional activator and regulator of mRNA translation. It binds to purine-rich elements in gene promoters and to specific RNA sequences, influencing cell cycle progression, neuronal differentiation, and synaptic function. Heterozygous loss-of-function mutations in PURA cause PURA syndrome, a neurodevelopmental disorder characterized by intellectual disability, hypotonia, and epilepsy.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
PURA syndrome (neurodevelopmental disorder) Heterozygous loss-of-function mutations (nonsense, frameshift, missense) reduce PURA protein levels or disrupt DNA/RNA binding, impairing neuronal gene expression and synaptic plasticity. ClinVar, OMIM #616158
Intellectual disability, autosomal dominant 31 De novo mutations in PURA cause a syndromic form of intellectual disability with motor delay and speech impairment. OMIM #616158, NCBI Gene
Epileptic encephalopathy, early infantile Severe PURA mutations are associated with early-onset seizures and developmental regression. ClinVar, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 12.5 Medium
Heart 8.3 Medium
Skeletal muscle 7.1 Medium
Liver 4.2 Low
Kidney 5.6 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 10.2 Neuronal model
HeLa (cervical carcinoma) 8.9 Epithelial
HEK293 (embryonic kidney) 7.5 Common expression system
K562 (leukemia) 6.1 Myeloid
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.697C>T (p.Arg233*) Nonsense Rare Loss of function; truncation of PURA protein
c.571_574del (p.Glu191Argfs*12) Frameshift Rare Loss of function; premature termination
c.389G>A (p.Arg130Gln) Missense Rare Impaired DNA binding; reduced transcriptional activity
c.1A>G (p.Met1?) Start loss Rare Loss of translation initiation; complete loss of protein
Mutation functional classification

Loss of Function (LOF)

Majority of pathogenic mutations (nonsense, frameshift, start loss) lead to haploinsufficiency, reducing PURA protein levels below 50%.

Gain of Function (GOF)

No evidence for gain-of-function mutations in PURA.

Dominant Negative (DN)

Some missense mutations (e.g., p.Arg130Gln) may exert dominant-negative effects by interfering with wild-type PURA binding to DNA/RNA.

Gene Ontology (GO)

• DNA binding (GO:0003677) • RNA binding (GO:0003723)
• transcription cis-regulatory region binding (GO:0000976) • mRNA binding (GO:0003729)
• regulation of transcription by RNA polymerase II (GO:0006357) • positive regulation of transcription
• DNA-templated (GO:0045893) • mRNA stabilization (GO:0048255)
• cell cycle (GO:0007049) • nervous system development (GO:0007399)

Pathways

Transcriptional regulation by PURA (Reactome: R-HSA-212436)
mRNA stability regulation (Reactome: R-HSA-8953854)
Neuronal differentiation (KEGG: hsa04728)

Protein Summary

PURA is a 322-amino acid protein (UniProt Q00577) containing two N-terminal DNA-binding domains and a C-terminal RNA-binding domain. It forms homodimers and heterodimers with PURB, binding to single-stranded purine-rich DNA sequences (e.g., PUR elements) and to specific mRNA targets (e.g., tau, MAP2). PURA regulates transcription of genes involved in cell cycle (e.g., cyclin B1) and neuronal development, and also controls mRNA translation and stability. Loss of PURA function leads to dysregulation of synaptic genes and neuronal excitability, underlying the pathogenesis of PURA syndrome.

Related Products

Product name Cat.No. Species Gene ID
PURA Knockout HEK293 Cell Line EDJ-KQ5608 Human 5813 Details Get a Quote
PURA Knockout HCT 116 Cell Line EDJ-KQ27634 Human 5813 Details Get a Quote
PURA Knockout A-549 Cell Line EDJ-KQ28891 Human 5813 Details Get a Quote
PURA Knockout HeLa Cell Line EDJ-KQ28893 Human 5813 Details Get a Quote
PURA Knockout hIPSC-ZZ Cell Line EDC07986 Human 5813 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
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