PICALM Gene: Phosphatidylinositol Binding Clathrin Assembly Protein
Key regulator of clathrin-mediated endocytosis and Alzheimer disease risk factor
Gene Information Card
| Symbol | PICALM |
|---|---|
| Full Name | Phosphatidylinositol Binding Clathrin Assembly Protein |
| Gene Type | Protein coding |
| Chromosomal Location | 11q14.2 |
| NCBI Gene ID | 8301 ncbi.nlm.nih.gov/gene/8301 |
| Ensembl ID | ENSG00000073921 |
| UniProt ID | Q13492 |
| OMIM ID | 603025 |
| HGNC ID | 15514 |
| Aliases | CALM, CLTH, LAP, PICALM1 |
Description
PICALM (phosphatidylinositol binding clathrin assembly protein) encodes a clathrin assembly protein that plays a critical role in clathrin-mediated endocytosis. It is involved in the internalization of cell surface receptors and synaptic vesicle recycling. Genome-wide association studies have identified PICALM as a susceptibility locus for late-onset Alzheimer disease. The protein contains an N-terminal ANTH domain that binds phosphatidylinositol-4,5-bisphosphate and a C-terminal domain that interacts with clathrin and adaptor protein complexes.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Alzheimer disease | PICALM variants affect amyloid-beta clearance and synaptic function via altered clathrin-mediated endocytosis | GWAS (Lambert et al., 2009, Nat Genet); multiple replication studies |
| Breast cancer | PICALM fusions (e.g., PICALM-MLLT10) are recurrent in acute leukemias; altered endocytosis may contribute to tumorigenesis | COSMIC; case reports |
| Acute myeloid leukemia | PICALM-MLLT10 fusion gene results from t(10;11)(p13;q14) translocation, driving leukemogenesis | COSMIC; literature |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 28.5 | High |
| Lung | 15.2 | Medium |
| Liver | 12.8 | Medium |
| Kidney | 18.1 | Medium |
| Heart | 14.6 | Medium |
| Spleen | 11.3 | Medium |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y | 32.4 | Neuroblastoma cell line; high expression |
| HEK293 | 25.1 | Embryonic kidney; moderate-high |
| HeLa | 22.7 | Cervical carcinoma; moderate |
| A549 | 19.8 | Lung carcinoma; moderate |
| K562 | 14.2 | Leukemia; moderate-low |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs3851179 | SNP (intronic) | Allele frequency ~0.36 (European) | Protective for Alzheimer disease; reduces PICALM expression |
| rs541458 | SNP (intronic) | Allele frequency ~0.40 (European) | Risk allele for Alzheimer disease |
| PICALM-MLLT10 fusion | Translocation | Rare | Oncogenic; drives leukemia |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations in PICALM impair clathrin-mediated endocytosis, reducing synaptic vesicle recycling and amyloid-beta clearance, contributing to Alzheimer disease pathology.
Gain of Function (GOF)
No well-characterized gain-of-function mutations reported in PICALM.
Dominant Negative (DN)
The PICALM-MLLT10 fusion protein may act as a dominant-negative oncoprotein by disrupting normal endocytic trafficking.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Clathrin-mediated endocytosis (Reactome R-HSA-8856828)
• Alzheimer disease (KEGG hsa05010)
• Endocytosis (KEGG hsa04144)
Protein Summary
PICALM is a 652-amino acid protein (UniProt Q13492) that functions as a clathrin assembly protein. It contains an N-terminal ANTH domain that binds phosphatidylinositol-4,5-bisphosphate, targeting it to the plasma membrane, and a C-terminal domain that recruits clathrin and AP-2 adaptor complexes. PICALM is essential for efficient clathrin-mediated endocytosis, including synaptic vesicle recycling and internalization of cell surface receptors. It is ubiquitously expressed with highest levels in brain. Genetic variants in PICALM are associated with Alzheimer disease risk, and chromosomal rearrangements involving PICALM are recurrent in acute leukemias.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PICALM Knockout HEK293 Cell Line | EDJ-KQ14752 | Human | 8301 | Details Get a Quote |
| PICALM Knockout A-549 Cell Line | EDJ-KQ45124 | Human | 8301 | Details Get a Quote |
| PICALM Knockout HCT 116 Cell Line | EDJ-KQ45125 | Human | 8301 | Details Get a Quote |
| PICALM Knockout HeLa Cell Line | EDJ-KQ45126 | Human | 8301 | Details Get a Quote |
| PICALM Knockout LN-229 Cell Line | EDJ-KZ392 | Human | 8301 | Details Get a Quote |
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