PCDH1
Protocadherin 1: A Non-Clustered Protocadherin Involved in Cell Adhesion and Asthma Susceptibility
Gene Information Card
| Symbol | PCDH1 |
|---|---|
| Full Name | Protocadherin 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 5q31.3 |
| NCBI Gene ID | 5097 ncbi.nlm.nih.gov/gene/5097 |
| Ensembl ID | ENSG00000113595 |
| UniProt ID | Q08174 |
| OMIM ID | 603626 |
| HGNC ID | 8656 |
| Aliases | PC42, PCDH1L, PCDH1S, PCDH1L1, PCDH1S1 |
Description
PCDH1 (protocadherin 1) is a member of the cadherin superfamily of calcium-dependent cell adhesion molecules. It encodes a non-clustered protocadherin with 7 extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic tail. PCDH1 is expressed in multiple tissues including lung, brain, and kidney, and plays a role in cell-cell adhesion, neuronal development, and airway epithelial integrity. Genetic variants in PCDH1 have been associated with asthma and bronchial hyperresponsiveness.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Asthma | PCDH1 variants may alter airway epithelial cell adhesion and barrier function, contributing to bronchial hyperresponsiveness | Association studies (Koppelman et al. 2009, NCBI) |
| Bronchial Hyperresponsiveness | Loss of PCDH1 function in airway epithelium may increase sensitivity to environmental triggers | Genetic linkage and association (OMIM #603626) |
| Lung Function Decline | PCDH1 expression changes in lung tissue correlate with reduced FEV1 | GWAS and expression studies (NCBI Gene) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lung | 12.5 | Medium |
| Brain | 8.3 | Low |
| Kidney | 6.7 | Low |
| Heart | 4.2 | Low |
| Liver | 1.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| A549 (lung carcinoma) | 15.2 | Moderate expression |
| HEK293 (embryonic kidney) | 9.8 | Low expression |
| SH-SY5Y (neuroblastoma) | 7.4 | Low expression |
| HepG2 (hepatocellular carcinoma) | 0.5 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs10762001 (intronic variant) | SNP | 0.15 (European) | Associated with asthma risk |
| rs10807150 (intronic variant) | SNP | 0.12 (European) | Associated with bronchial hyperresponsiveness |
| c.1258G>A (p.Gly420Arg) | Missense | Rare | Potential loss of cell adhesion function |
Mutation functional classification
Loss of Function (LOF)
Missense variants in extracellular cadherin repeats may disrupt calcium binding and adhesion (e.g., p.Gly420Arg).
Gain of Function (GOF)
Not reported for PCDH1.
Dominant Negative (DN)
Not established; PCDH1 likely functions as a homodimer, but dominant-negative effects have not been documented.
View complete mutation data:
Gene Ontology (GO)
| • calcium ion binding | • cell adhesion |
| • homophilic cell adhesion via plasma membrane adhesion molecules | • plasma membrane |
| • integral component of membrane | • synapse assembly |
Pathways
• Cadherin signaling pathway
• Cell adhesion molecules (CAMs)
• Wnt signaling pathway (potential)
Protein Summary
Protocadherin 1 is a 1067-amino acid transmembrane protein belonging to the cadherin superfamily. It contains 7 extracellular cadherin repeats, a single transmembrane domain, and a cytoplasmic region with conserved motifs. The protein mediates homophilic cell-cell adhesion in a calcium-dependent manner. PCDH1 is expressed in airway epithelium, where it contributes to barrier integrity, and in neural tissues where it may influence synaptic development. Alternative splicing generates multiple isoforms.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PCDH1 Knockout HEK293 Cell Line | EDJ-KQ5408 | Human | 5097 | Details Get a Quote |
| PCDH11X Knockout HEK293 Cell Line | EDJ-KQ8010 | Human | 27328 | Details Get a Quote |
| PCDH17 Knockout HEK293 Cell Line | EDJ-KQ8731 | Human | 27253 | Details Get a Quote |
| PCDH11Y Knockout HEK293 Cell Line | EDJ-KQ9837 | Human | 83259 | Details Get a Quote |
| PCDH18 Knockout HEK293 Cell Line | EDJ-KQ11446 | Human | 54510 | Details Get a Quote |
| PCDH10 Knockout HEK293 Cell Line | EDJ-KQ14699 | Human | 57575 | Details Get a Quote |
| PCDH15 Knockout HEK293 Cell Line | EDJ-KQ14700 | Human | 65217 | Details Get a Quote |
| PCDH19 Knockout HEK293 Cell Line | EDJ-KQ14701 | Human | 57526 | Details Get a Quote |
| PCDH1 Knockout HeLa Cell Line | EDJ-KQ27328 | Human | 5097 | Details Get a Quote |
| PCDH1 Knockout A-549 Cell Line | EDJ-KQ28570 | Human | 5097 | Details Get a Quote |
| PCDH1 Knockout HCT 116 Cell Line | EDJ-KQ28571 | Human | 5097 | Details Get a Quote |
| PCDH12 Knockout HEK293 Cell Line | EDJ-KQ51303 | Human | 51294 | Details Get a Quote |
| PCDH17 Knockout HeLa Cell Line | EDJ-KQ56040 | Human | 27253 | Details Get a Quote |
| PCDH11X Knockout HeLa Cell Line | EDJ-KQ56058 | Human | 27328 | Details Get a Quote |
| PCDH12 Knockout HeLa Cell Line | EDJ-KQ56273 | Human | 51294 | Details Get a Quote |
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