NFATC3: A Key Transcription Factor in Immune Regulation and Development
Comprehensive genomic and functional overview of the nuclear factor of activated T-cells 3 gene
Gene Information Card
| Symbol | NFATC3 |
|---|---|
| Full Name | Nuclear factor of activated T-cells 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 16q22.1 |
| NCBI Gene ID | 4775 ncbi.nlm.nih.gov/gene/4775 |
| Ensembl ID | ENSG00000072736 |
| UniProt ID | Q12968 |
| OMIM ID | 602698 |
| HGNC ID | 7777 |
| Aliases | NFAT4, NFATX |
Description
NFATC3 (nuclear factor of activated T-cells 3) encodes a member of the nuclear factor of activated T-cells (NFAT) family of transcription factors. This protein plays a critical role in inducible gene expression during immune response, particularly in T-cells, and is involved in cardiac development, skeletal muscle growth, and neuronal function. It is regulated by calcium signaling and calcineurin-mediated dephosphorylation, which promotes its nuclear translocation and transcriptional activity.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Immunodeficiency | Dysregulation of NFATC3-mediated cytokine expression | ClinVar, OMIM |
| Cardiac hypertrophy | Altered NFATC3 nuclear translocation and transcriptional activity | NCBI, PubMed |
| Cancer (various) | Aberrant NFATC3 signaling affecting cell proliferation and apoptosis | COSMIC, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lymph node | 12.5 | Medium |
| Spleen | 10.8 | Medium |
| Heart | 8.2 | Medium |
| Brain | 6.4 | Low |
| Lung | 5.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Jurkat (T-cell) | 15.3 | High expression; relevant for immune function |
| HEK293 | 7.8 | Moderate expression |
| HeLa | 6.2 | Low expression |
| K562 | 4.9 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234C>T (p.Arg412Trp) | Missense | <0.01% | Altered DNA-binding affinity |
| c.567_569del (p.Lys189del) | Deletion | <0.01% | Impaired nuclear localization |
| c.2101G>A (p.Gly701Ser) | Missense | <0.01% | Reduced transcriptional activity |
Mutation functional classification
Loss of Function (LOF)
Mutations that impair DNA binding or nuclear translocation reduce transcriptional activation of target genes.
Gain of Function (GOF)
Not well documented; some variants may enhance calcineurin-independent activation.
Dominant Negative (DN)
Truncating or missense mutations that interfere with wild-type NFATC3 function have been reported.
View complete mutation data:
Gene Ontology (GO)
| • DNA-binding transcription factor activity | • RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| • calcium ion binding | • nucleus |
| • cytoplasm | • positive regulation of transcription by RNA polymerase II |
| • immune response | • cardiac muscle cell differentiation |
Pathways
• NFAT signaling pathway
• Calcineurin-NFAT signaling
• T-cell receptor signaling pathway
• Cardiac hypertrophy signaling
Protein Summary
NFATC3 is a 1075-amino acid protein belonging to the NFAT family. It contains a conserved Rel homology domain (RHD) for DNA binding and a regulatory domain that interacts with calcineurin. Upon calcium signaling, calcineurin dephosphorylates NFATC3, exposing a nuclear localization signal and enabling translocation to the nucleus, where it regulates transcription of cytokines, growth factors, and other immune-related genes. The protein is expressed in multiple tissues, with highest levels in lymphoid organs and heart.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NFATC3 Knockout HEK293 Cell Line | EDJ-KQ714 | Human | 4775 | Details Get a Quote |
| NFATC3 Knockout A-549 Cell Line | EDJ-KQ19325 | Human | 4775 | Details Get a Quote |
| NFATC3 Knockout HCT 116 Cell Line | EDJ-KQ19326 | Human | 4775 | Details Get a Quote |
| NFATC3 Knockout HeLa Cell Line | EDJ-KQ19327 | Human | 4775 | Details Get a Quote |
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