NEDD8-MDP1: A Readthrough Transcript with Potential Regulatory Roles

A naturally occurring readthrough transcript combining NEDD8 and MDP1 sequences, potentially involved in ubiquitin-like modification and mitochondrial dynamics.

Gene Information Card

Symbol NEDD8-MDP1
Full Name NEDD8-MDP1 readthrough transcript
Gene Type Readthrough transcript (protein-coding potential)
Chromosomal Location 14q11.2 (based on NEDD8 and MDP1 loci)
NCBI Gene ID 100874080 ncbi.nlm.nih.gov/gene/100874080
Ensembl ID ENSG00000269319
UniProt ID Not available (no stable protein product reported)
OMIM ID Not assigned (no OMIM entry for readthrough)
HGNC ID HGNC:49384
Aliases NEDD8-MDP1 readthrough, NEDD8-MDP1 fusion transcript

Description

NEDD8-MDP1 is a readthrough transcript that arises from the natural fusion of the NEDD8 (neural precursor cell expressed, developmentally down-regulated 8) and MDP1 (magnesium-dependent phosphatase 1) genes, located in close proximity on chromosome 14q11.2. This transcript is produced by the splicing of exons from both genes, resulting in a chimeric mRNA that retains the coding sequence of NEDD8 and the 3' UTR of MDP1. The readthrough event is supported by transcript evidence in Ensembl and NCBI, but no stable protein product has been experimentally validated. The transcript may play a regulatory role, potentially through the production of a NEDD8-MDP1 fusion protein or via non-coding functions, such as acting as a competitive endogenous RNA (ceRNA) or modulating the expression of its parental genes. NEDD8 is a ubiquitin-like protein involved in neddylation, a post-translational modification that regulates protein degradation and cell cycle, while MDP1 encodes a magnesium-dependent phosphatase implicated in mitochondrial function. The readthrough transcript may therefore influence these pathways, but its physiological relevance remains to be fully characterized.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (potential) Dysregulation of NEDD8-MDP1 readthrough may affect neddylation and mitochondrial dynamics, contributing to tumorigenesis; however, direct evidence is lacking. No direct disease association reported in ClinVar or COSMIC; inferred from parental gene functions.
Neurodevelopmental disorders (potential) NEDD8 is involved in neuronal development; readthrough may alter NEDD8 expression, but no clinical evidence. No direct evidence; speculative based on NEDD8 function.

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 0.0 Not expressed (based on GTEx data via Ensembl)
Thyroid 0.0 Not expressed
Skin 0.0 Not expressed
Lung 0.0 Not expressed
Brain 0.0 Not expressed
Cell Line Expression
Cell Line nTPM Notes
HeLa 0.0 No expression detected in standard cell lines
HEK293 0.0 No expression detected
K562 0.0 No expression detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
No specific variants reported N/A N/A No curated mutations in ClinVar or COSMIC for this readthrough transcript.
Mutation functional classification

Loss of Function (LOF)

Not applicable; no functional protein product or disease-associated mutations identified.

Gain of Function (GOF)

Not applicable; no evidence of oncogenic or pathogenic gain-of-function mutations.

Dominant Negative (DN)

Not applicable; no evidence of dominant-negative effects.

Pathways

• Neddylation pathway (via NEDD8)
• Mitochondrial phosphate metabolism (via MDP1)

Protein Summary

The NEDD8-MDP1 readthrough transcript is predicted to encode a chimeric protein consisting of the N-terminal NEDD8 domain and a C-terminal portion of MDP1, but no endogenous protein has been detected. The NEDD8 domain would be expected to participate in neddylation, while the MDP1 portion may retain phosphatase activity, though the fusion may disrupt normal function. Due to lack of experimental validation, the protein's existence and function remain hypothetical.

Related Products

Product name Cat.No. Species Gene ID
NEDD8-MDP1 Knockout HEK293 Cell Line EDJ-KQ52490 Human 100528064 Details Get a Quote
NEDD8-MDP1 Knockout HeLa Cell Line EDJ-KQ60953 Human 100528064 Details Get a Quote
NEDD8-MDP1 Knockout A-549 Cell Line EDJ-KQ69428 Human 100528064 Details Get a Quote
NEDD8-MDP1 Knockout HCT 116 Cell Line EDJ-KQ77779 Human 100528064 Details Get a Quote
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