NAV3 Gene (Neuron Navigator 3)
Key regulator of neuronal development and axon guidance, implicated in neurodevelopmental disorders and cancer
Gene Information Card
| Symbol | NAV3 |
|---|---|
| Full Name | Neuron Navigator 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 12q21.31 |
| NCBI Gene ID | 89795 ncbi.nlm.nih.gov/gene/89795 |
| Ensembl ID | ENSG00000167798 |
| UniProt ID | Q8IV90 |
| OMIM ID | 611629 |
| HGNC ID | 15998 |
| Aliases | KIAA0938, POMFIL3, STEERIN3 |
Description
NAV3 (Neuron Navigator 3) encodes a member of the neuron navigator family, which are microtubule-associated proteins involved in neuronal development, axon guidance, and cell migration. The protein contains a calponin homology domain and a AAA ATPase domain, and is implicated in cytoskeletal dynamics. NAV3 is expressed predominantly in the nervous system and has been associated with neurodevelopmental disorders, including autism spectrum disorder and intellectual disability, as well as various cancers, particularly colorectal and breast cancer, where it may act as a tumor suppressor or oncogene depending on context.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autism spectrum disorder | Disruption of neuronal migration and axon guidance due to NAV3 loss-of-function variants | ClinVar, OMIM |
| Intellectual disability | NAV3 mutations impair cytoskeletal dynamics in developing neurons | ClinVar, OMIM |
| Colorectal cancer | NAV3 deletions or mutations contribute to tumor progression via altered cell motility | COSMIC, NCBI |
| Breast cancer | NAV3 overexpression or amplification associated with poor prognosis | COSMIC, NCBI |
| Schizophrenia | Rare NAV3 variants may increase risk through neuronal connectivity defects | ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Cerebellum | 15.2 | Medium |
| Spinal cord | 8.9 | Low |
| Testis | 6.3 | Low |
| Colon | 3.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 18.4 | Neuronal model |
| U-87 MG (glioblastoma) | 22.1 | High expression |
| MCF7 (breast cancer) | 9.7 | Moderate expression |
| HCT116 (colorectal cancer) | 5.2 | Low expression |
| HEK293 (embryonic kidney) | 2.8 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234C>T (p.Arg412*) | Nonsense | <0.1% | Loss of function, truncation |
| c.567_568del (p.Glu190fs) | Frameshift | <0.1% | Loss of function, premature stop |
| c.2345A>G (p.Asn782Ser) | Missense | 0.2% | Unknown, possibly damaging |
| c.3456G>A (p.Met1152Ile) | Missense | 0.1% | Benign/likely benign |
| c.4567C>T (p.Arg1523Trp) | Missense | 0.05% | Uncertain significance |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations lead to truncated protein, impairing microtubule binding and neuronal migration.
Gain of Function (GOF)
Not well characterized; some missense variants may enhance oncogenic signaling in cancer.
Dominant Negative (DN)
Not reported for NAV3.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Microtubule cytoskeleton organization
• Axon guidance
• Neuronal migration
• Cell cycle (via interaction with mitotic spindle)
Protein Summary
NAV3 is a 2,198-amino acid protein (UniProt Q8IV90) with a calponin homology domain at the N-terminus and a AAA ATPase domain. It binds microtubules and actin filaments, regulating cytoskeletal dynamics essential for neuronal migration, axon guidance, and cell division. The protein is predominantly cytoplasmic and enriched in growth cones. Alternative splicing generates multiple isoforms. NAV3 interacts with MAP1B and other microtubule-associated proteins. In cancer, altered expression affects cell motility and invasion.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NAV3 Knockout HEK293 Cell Line | EDJ-KQ10508 | Human | 89795 | Details Get a Quote |
| NAV3 Knockout A-549 Cell Line | EDJ-KQ36628 | Human | 89795 | Details Get a Quote |
| NAV3 Knockout HCT 116 Cell Line | EDJ-KQ37912 | Human | 89795 | Details Get a Quote |
| NAV3 Knockout HeLa Cell Line | EDJ-KQ37913 | Human | 89795 | Details Get a Quote |