LTBR: Lymphotoxin Beta Receptor

A key regulator of immune signaling and lymphoid organ development

Gene Information Card

Symbol LTBR
Full Name Lymphotoxin Beta Receptor
Gene Type Protein coding
Chromosomal Location 12p13.31
NCBI Gene ID 4055 ncbi.nlm.nih.gov/gene/4055
Ensembl ID ENSG00000111321
UniProt ID P36941
OMIM ID 600979
HGNC ID 6718
Aliases TNFRSF3, LT-BETA-R, TNFR2-RP, CD18

Description

The LTBR gene encodes the lymphotoxin beta receptor (LTβR), a member of the tumor necrosis factor receptor (TNFR) superfamily. LTβR is expressed on the surface of stromal cells, epithelial cells, and myeloid cells, and binds the heterotrimeric ligand lymphotoxin α1β2 (LTα1β2) as well as LIGHT (TNFSF14). Activation of LTβR triggers canonical and non-canonical NF-κB signaling pathways, playing a critical role in the development and organization of secondary lymphoid organs, maintenance of lymph node architecture, and regulation of immune responses. LTBR is also involved in inflammatory signaling, apoptosis, and cancer progression.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Lymphoma (various subtypes) LTBR signaling via non-canonical NF-κB promotes survival and proliferation of malignant B cells COSMIC, PubMed
Colorectal cancer LTBR overexpression correlates with poor prognosis; activation of NF-κB enhances tumor growth COSMIC, PubMed
Inflammatory bowel disease (IBD) LTBR-mediated signaling contributes to chronic intestinal inflammation and lymphoid neogenesis PubMed
Multiple sclerosis LTBR pathway involved in CNS inflammation and lymphoid follicle formation in meninges PubMed
Rheumatoid arthritis LTBR signaling in synovial fibroblasts promotes inflammation and joint destruction PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Lymph node 12.5 High
Spleen 10.8 High
Bone marrow 8.2 Medium
Lung 6.7 Medium
Colon 5.9 Medium
Liver 4.3 Low
Kidney 3.1 Low
Brain 1.2 Not detected
Cell Line Expression
Cell Line nTPM Notes
HEK 293 15.2 High (overexpression model)
HeLa 8.9 Medium
THP-1 (monocyte) 7.4 Medium
Jurkat (T cell) 2.1 Low
K562 (erythroleukemia) 1.8 Low
MCF7 (breast cancer) 6.3 Medium
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.617G>A (p.Arg206His) Missense 0.02% (gnomAD) Unknown; predicted benign
c.1045C>T (p.Arg349Trp) Missense 0.01% (gnomAD) Unknown; predicted damaging
c.1234_1235insA (p.Thr412Asnfs*5) Frameshift Rare Loss of function
c.76C>T (p.Arg26*) Nonsense Rare Loss of function
Mutation functional classification

Loss of Function (LOF)

Frameshift and nonsense mutations (e.g., p.Thr412Asnfs*5, p.Arg26*) are predicted to cause loss of LTBR function, impairing NF-κB signaling and lymphoid development.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported in LTBR; overexpression in cancer may mimic gain-of-function effects.

Dominant Negative (DN)

No dominant-negative mutations described for LTBR in current literature.

Pathways

Non-canonical NF-κB signaling (Reactome: R-HSA-5676590)
Lymphotoxin beta receptor signaling (Reactome: R-HSA-5668541)
TNFR2 non-canonical NF-κB pathway (KEGG: hsa04064)
Cytokine-cytokine receptor interaction (KEGG: hsa04060)

Protein Summary

The lymphotoxin beta receptor (LTβR) is a 435-amino acid type I transmembrane protein with an extracellular domain containing four cysteine-rich repeats characteristic of the TNFR superfamily. The intracellular domain contains TRAF-binding motifs that recruit TRAF2, TRAF3, and TRAF5, leading to activation of both canonical and non-canonical NF-κB pathways. LTβR is essential for the formation of lymph nodes, Peyer's patches, and splenic organization. It also regulates chemokine expression, dendritic cell homeostasis, and antiviral immunity. Aberrant LTβR signaling is implicated in autoimmune diseases and cancer.

Related Products

Product name Cat.No. Species Gene ID
LTBR Knockout HEK293 Cell Line EDJ-KQ573 Human 4055 Details Get a Quote
LTBR Knockout A-549 Cell Line EDJ-KQ18967 Human 4055 Details Get a Quote
LTBR Knockout HCT 116 Cell Line EDJ-KQ18968 Human 4055 Details Get a Quote
LTBR Knockout HeLa Cell Line EDJ-KQ18969 Human 4055 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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