LGI1 Gene (Leucine-Rich Glioma Inactivated 1)
Key regulator of synaptic transmission and epilepsy-associated gene
Gene Information Card
| Symbol | LGI1 |
|---|---|
| Full Name | Leucine-rich glioma inactivated 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 10q24.33 |
| NCBI Gene ID | 9211 ncbi.nlm.nih.gov/gene/9211 |
| Ensembl ID | ENSG00000108231 |
| UniProt ID | O95970 |
| OMIM ID | 604619 |
| HGNC ID | 6571 |
| Aliases | EPITEMPIN, ETL1, IB1099, MGC126722 |
Description
The LGI1 gene encodes a protein that belongs to the leucine-rich repeat (LRR) superfamily. It is predominantly expressed in the brain, particularly in neurons, and plays a critical role in synaptic transmission by interacting with ADAM22 and ADAM23 receptors. LGI1 regulates AMPA receptor-mediated synaptic currents and is essential for normal neuronal excitability. Mutations in LGI1 are a major cause of autosomal dominant lateral temporal epilepsy (ADLTE), also known as autosomal dominant partial epilepsy with auditory features (ADPEAF). The protein is secreted and functions as a ligand that bridges presynaptic and postsynaptic compartments.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autosomal dominant lateral temporal epilepsy (ADLTE) | Loss-of-function mutations in LGI1 disrupt the interaction with ADAM22/ADAM23, impairing synaptic transmission and leading to hyperexcitability. | ClinVar, OMIM |
| Epilepsy, familial temporal lobe, 1 (ETL1) | Same mechanism as ADLTE; LGI1 mutations are causative. | OMIM, NCBI |
| Glioma (potential role) | LGI1 expression is reduced in gliomas; loss may contribute to tumor progression, though direct causal evidence is limited. | COSMIC, NCBI |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain (cerebral cortex) | 12.5 | High |
| Brain (hippocampus) | 11.8 | High |
| Brain (cerebellum) | 8.2 | Medium |
| Testis | 2.1 | Low |
| Lung | 0.5 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 15.3 | High expression |
| U-87 MG (glioblastoma) | 6.7 | Medium expression |
| HEK293 (embryonic kidney) | 0.2 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.329C>T (p.Thr110Ile) | Missense | Rare | Loss of protein secretion and ADAM22 binding |
| c.758G>A (p.Arg253Gln) | Missense | Rare | Impaired synaptic targeting |
| c.1070T>C (p.Leu357Pro) | Missense | Rare | Disrupted LRR domain folding |
| c.1418_1419delAG (p.Glu473Valfs*12) | Frameshift | Rare | Premature truncation, loss of function |
Mutation functional classification
Loss of Function (LOF)
Most LGI1 mutations in ADLTE are loss-of-function, leading to reduced protein secretion, impaired interaction with ADAM22/ADAM23, and decreased synaptic AMPA receptor clustering.
Gain of Function (GOF)
No gain-of-function mutations have been reported for LGI1.
Dominant Negative (DN)
Some missense mutations may exert a dominant-negative effect by interfering with wild-type LGI1 function, though haploinsufficiency is the primary mechanism.
View complete mutation data:
Gene Ontology (GO)
Pathways
• LGI1-ADAM22 interaction in synaptic transmission (Reactome: R-HSA-8849932)
• AMPA receptor trafficking (Reactome: R-HSA-399719)
Protein Summary
The LGI1 protein (UniProt O95970) is a 557-amino acid secreted protein containing an N-terminal signal peptide, four leucine-rich repeats (LRRs), and a C-terminal epitempin domain. It is synthesized in neurons and released into the synaptic cleft, where it binds to ADAM22 and ADAM23 receptors on the postsynaptic membrane. This interaction stabilizes AMPA receptors at the synapse, facilitating glutamatergic transmission. LGI1 is critical for preventing neuronal hyperexcitability; loss of function leads to temporal lobe epilepsy. The protein is also implicated in glioma suppression, though its role in cancer is less defined.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| LGI1 Knockout HEK293 Cell Line | EDJ-KQ6506 | Human | 9211 | Details Get a Quote |
| LGI1 Knockout HeLa Cell Line | EDJ-KQ55103 | Human | 9211 | Details Get a Quote |
| LGI1 Knockout A-549 Cell Line | EDJ-KQ63585 | Human | 9211 | Details Get a Quote |
| LGI1 Knockout HCT 116 Cell Line | EDJ-KQ72050 | Human | 9211 | Details Get a Quote |