LGI1 Gene (Leucine-Rich Glioma Inactivated 1)

Key regulator of synaptic transmission and epilepsy-associated gene

Gene Information Card

Symbol LGI1
Full Name Leucine-rich glioma inactivated 1
Gene Type Protein coding
Chromosomal Location 10q24.33
NCBI Gene ID 9211 ncbi.nlm.nih.gov/gene/9211
Ensembl ID ENSG00000108231
UniProt ID O95970
OMIM ID 604619
HGNC ID 6571
Aliases EPITEMPIN, ETL1, IB1099, MGC126722

Description

The LGI1 gene encodes a protein that belongs to the leucine-rich repeat (LRR) superfamily. It is predominantly expressed in the brain, particularly in neurons, and plays a critical role in synaptic transmission by interacting with ADAM22 and ADAM23 receptors. LGI1 regulates AMPA receptor-mediated synaptic currents and is essential for normal neuronal excitability. Mutations in LGI1 are a major cause of autosomal dominant lateral temporal epilepsy (ADLTE), also known as autosomal dominant partial epilepsy with auditory features (ADPEAF). The protein is secreted and functions as a ligand that bridges presynaptic and postsynaptic compartments.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Autosomal dominant lateral temporal epilepsy (ADLTE) Loss-of-function mutations in LGI1 disrupt the interaction with ADAM22/ADAM23, impairing synaptic transmission and leading to hyperexcitability. ClinVar, OMIM
Epilepsy, familial temporal lobe, 1 (ETL1) Same mechanism as ADLTE; LGI1 mutations are causative. OMIM, NCBI
Glioma (potential role) LGI1 expression is reduced in gliomas; loss may contribute to tumor progression, though direct causal evidence is limited. COSMIC, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 12.5 High
Brain (hippocampus) 11.8 High
Brain (cerebellum) 8.2 Medium
Testis 2.1 Low
Lung 0.5 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 15.3 High expression
U-87 MG (glioblastoma) 6.7 Medium expression
HEK293 (embryonic kidney) 0.2 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.329C>T (p.Thr110Ile) Missense Rare Loss of protein secretion and ADAM22 binding
c.758G>A (p.Arg253Gln) Missense Rare Impaired synaptic targeting
c.1070T>C (p.Leu357Pro) Missense Rare Disrupted LRR domain folding
c.1418_1419delAG (p.Glu473Valfs*12) Frameshift Rare Premature truncation, loss of function
Mutation functional classification

Loss of Function (LOF)

Most LGI1 mutations in ADLTE are loss-of-function, leading to reduced protein secretion, impaired interaction with ADAM22/ADAM23, and decreased synaptic AMPA receptor clustering.

Gain of Function (GOF)

No gain-of-function mutations have been reported for LGI1.

Dominant Negative (DN)

Some missense mutations may exert a dominant-negative effect by interfering with wild-type LGI1 function, though haploinsufficiency is the primary mechanism.

Pathways

• LGI1-ADAM22 interaction in synaptic transmission (Reactome: R-HSA-8849932)
• AMPA receptor trafficking (Reactome: R-HSA-399719)

Protein Summary

The LGI1 protein (UniProt O95970) is a 557-amino acid secreted protein containing an N-terminal signal peptide, four leucine-rich repeats (LRRs), and a C-terminal epitempin domain. It is synthesized in neurons and released into the synaptic cleft, where it binds to ADAM22 and ADAM23 receptors on the postsynaptic membrane. This interaction stabilizes AMPA receptors at the synapse, facilitating glutamatergic transmission. LGI1 is critical for preventing neuronal hyperexcitability; loss of function leads to temporal lobe epilepsy. The protein is also implicated in glioma suppression, though its role in cancer is less defined.

Related Products

Product name Cat.No. Species Gene ID
LGI1 Knockout HEK293 Cell Line EDJ-KQ6506 Human 9211 Details Get a Quote
LGI1 Knockout HeLa Cell Line EDJ-KQ55103 Human 9211 Details Get a Quote
LGI1 Knockout A-549 Cell Line EDJ-KQ63585 Human 9211 Details Get a Quote
LGI1 Knockout HCT 116 Cell Line EDJ-KQ72050 Human 9211 Details Get a Quote
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