LAG3 (Lymphocyte Activating 3) Gene: Structure, Function, and Clinical Significance
A comprehensive biomedical overview of the LAG3 gene, encoding an immune checkpoint receptor, with relevance to cancer immunotherapy and autoimmune diseases.
Gene Information Card
| Symbol | LAG3 |
|---|---|
| Full Name | Lymphocyte Activating 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 12p13.32 |
| NCBI Gene ID | 3902 ncbi.nlm.nih.gov/gene/3902 |
| Ensembl ID | ENSG00000089692 |
| UniProt ID | P18627 |
| OMIM ID | 153337 |
| HGNC ID | 6476 |
| Aliases | CD223, LAG-3, FDC, LAG3 protein |
Description
The LAG3 gene encodes the lymphocyte activation gene 3 protein, a type I transmembrane protein belonging to the immunoglobulin superfamily. LAG3 is expressed on activated T cells, natural killer (NK) cells, and plasmacytoid dendritic cells, where it negatively regulates T cell activation and proliferation. It binds to MHC class II molecules with high affinity, and its engagement leads to inhibition of T cell receptor signaling. LAG3 is a key immune checkpoint receptor, and its blockade is being explored in cancer immunotherapy. Additionally, LAG3 has been implicated in autoimmune diseases and chronic infections, where its expression on exhausted T cells contributes to immune dysfunction.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (various types) | LAG3 overexpression on tumor-infiltrating lymphocytes leads to T cell exhaustion and immune evasion; blockade enhances anti-tumor immunity. | Multiple studies in cancer immunology; clinical trials with anti-LAG3 antibodies (e.g., relatlimab) show efficacy in melanoma. |
| Autoimmune diseases (e.g., rheumatoid arthritis, type 1 diabetes) | LAG3 deficiency or dysfunction may lead to unchecked T cell activation and autoimmunity; LAG3 variants are associated with susceptibility. | Genetic association studies and animal models (LAG3 knockout mice develop autoimmune phenotypes). |
| Chronic viral infections (e.g., HIV, HCV) | LAG3 is upregulated on exhausted T cells during chronic infection, contributing to impaired viral control. | Observational studies in patient cohorts; functional assays showing LAG3 blockade restores T cell function. |
| Multiple sclerosis | LAG3 may modulate regulatory T cell function; altered expression is observed in peripheral blood. | Case-control studies and experimental autoimmune encephalomyelitis (EAE) models. |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lymph node | 0.8 | Low |
| Spleen | 0.5 | Low |
| Thymus | 0.3 | Low |
| Bone marrow | 0.2 | Low |
| Blood | 0.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Jurkat (T cell leukemia) | 0.1 | Low baseline; inducible upon activation |
| K562 (chronic myelogenous leukemia) | 0.0 | Not expressed |
| A549 (lung carcinoma) | 0.0 | Not expressed |
| MCF7 (breast carcinoma) | 0.0 | Not expressed |
| HEK293 (embryonic kidney) | 0.0 | Not expressed |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs870849 (C/T) | SNP (intronic) | Allele frequency: C=0.35, T=0.65 (global) | Associated with altered LAG3 expression and autoimmune disease risk in some studies. |
| rs1882543 (A/G) | SNP (intronic) | Allele frequency: A=0.30, G=0.70 | Potential impact on splicing; linked to multiple sclerosis susceptibility. |
| c.539C>T (p.Pro180Leu) | Missense | Rare (MAF <0.01) | Located in extracellular domain; may affect MHC class II binding. |
| c.847G>A (p.Val283Met) | Missense | Rare (MAF <0.01) | In transmembrane domain; potential effect on signaling. |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations in LAG3 are rare but have been reported in autoimmune conditions, leading to reduced inhibitory signaling and enhanced T cell activation.
Gain of Function (GOF)
Gain-of-function mutations that increase LAG3 expression or signaling are not well characterized; however, overexpression in tumors is common and contributes to immune evasion.
Dominant Negative (DN)
No dominant-negative mutations have been described for LAG3.
View complete mutation data:
Gene Ontology (GO)
Pathways
• T cell receptor signaling pathway (KEGG hsa04660)
• PD-1/PD-L1 checkpoint pathway (KEGG hsa05235)
• Immune checkpoint regulation (Reactome: R-HSA-389948)
• Costimulation by the CD28 family (Reactome: R-HSA-388841)
Protein Summary
The LAG3 protein (CD223) is a 498-amino acid type I transmembrane glycoprotein with four extracellular immunoglobulin-like domains (D1-D4). The D1 domain contains a unique 'extra loop' that is critical for MHC class II binding. LAG3 is expressed on activated T cells, NK cells, and plasmacytoid dendritic cells. It negatively regulates T cell activation by competing with CD4 for MHC class II binding and by transmitting inhibitory signals via its cytoplasmic domain. LAG3 is cleaved by ADAM10/17 metalloproteases, releasing a soluble form (sLAG3) that can be detected in serum. LAG3 plays a role in regulatory T cell function and is a target for cancer immunotherapy.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| LAG3 Knockout HEK293 Cell Line | EDJ-KQ17690 | Human | 3902 | Details Get a Quote |
| LAG3 Knockout HeLa Cell Line | EDJ-KQ19777 | Human | 3902 | Details Get a Quote |
| LAG3 Knockout A-549 Cell Line | EDJ-KQ62251 | Human | 3902 | Details Get a Quote |
| LAG3 Knockout HCT 116 Cell Line | EDJ-KQ70736 | Human | 3902 | Details Get a Quote |