KHDRBS1 Gene: Structure, Function, and Clinical Significance

A comprehensive guide to KHDRBS1 (KH domain containing, RNA binding, signal transduction associated 1) – its genomic context, expression, mutations, and role in disease.

Gene Information Card

Symbol KHDRBS1
Full Name KH domain containing, RNA binding, signal transduction associated 1
Gene Type protein coding
Chromosomal Location 1p32.3
NCBI Gene ID 10657 ncbi.nlm.nih.gov/gene/10657
Ensembl ID ENSG00000130779
UniProt ID Q07666
OMIM ID 602489
HGNC ID 18116
Aliases SAM68, p62, GAP-associated tyrosine phosphoprotein p62

Description

KHDRBS1 (KH domain containing, RNA binding, signal transduction associated 1), commonly known as SAM68, is a multifunctional RNA-binding protein involved in signal transduction, RNA splicing, and gene regulation. It contains a KH domain that mediates RNA binding and several proline-rich regions and tyrosine phosphorylation sites. KHDRBS1 plays roles in cell cycle progression, apoptosis, and DNA damage response. It is implicated in various cancers and neurological disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (multiple types) KHDRBS1 overexpression or altered splicing contributes to tumorigenesis via regulation of oncogenes and tumor suppressors. COSMIC, PubMed
Prostate cancer KHDRBS1 interacts with androgen receptor and modulates its transcriptional activity, promoting cancer progression. PubMed
Breast cancer KHDRBS1 regulates alternative splicing of genes involved in cell proliferation and survival. PubMed
HIV infection KHDRBS1 is a cellular cofactor for HIV-1 Rev protein, essential for viral RNA export. PubMed
Neurodegenerative disorders KHDRBS1 is involved in neuronal RNA metabolism; dysregulation linked to Alzheimer's disease. PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.3 Medium
Testis 8.7 Low
Lung 6.2 Low
Liver 5.1 Low
Kidney 4.8 Low
Cell Line Expression
Cell Line nTPM Notes
HeLa 15.2 High expression
A549 10.5 Moderate
MCF7 12.8 High
K562 9.3 Moderate
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.123A>G (p.Ile41Met) Missense 0.01% Potential impact on RNA binding
c.456C>T (p.Pro152Leu) Missense 0.02% Unknown
c.789del (p.Gln264fs) Frameshift 0.005% Loss of function
Mutation functional classification

Loss of Function (LOF)

Frameshift mutations leading to truncated protein may impair RNA binding and regulatory functions.

Gain of Function (GOF)

Missense mutations in the KH domain could alter RNA binding specificity, potentially enhancing oncogenic activity.

Dominant Negative (DN)

Mutations that disrupt dimerization or interactions with partners may exert dominant-negative effects.

Gene Ontology (GO)

• RNA binding • DNA binding
• protein binding • mRNA binding
• nucleotide binding • signal transducer activity
• involved in mRNA splicing • via spliceosome
• regulation of transcription • DNA-templated
• cell cycle • apoptotic process

Pathways

mRNA Splicing - Major Pathway
Signaling by Rho GTPases
Androgen receptor signaling pathway
HIV Life Cycle

Protein Summary

The KHDRBS1 protein (SAM68) is a 443-amino acid RNA-binding protein with a central KH domain that binds to RNA and DNA. It contains multiple proline-rich motifs and tyrosine phosphorylation sites, enabling interactions with SH2 and SH3 domain-containing proteins. SAM68 participates in signal transduction cascades, alternative splicing regulation, and cell cycle control. Its subcellular localization is predominantly nuclear, but it shuttles to the cytoplasm upon phosphorylation. Post-translational modifications such as tyrosine phosphorylation by Src family kinases modulate its RNA-binding activity and cellular functions.

Related Products

Product name Cat.No. Species Gene ID
KHDRBS1 Knockout HEK293 Cell Line EDJ-KQ3548 Human 10657 Details Get a Quote
KHDRBS1 Knockout A-549 Cell Line EDJ-KQ24022 Human 10657 Details Get a Quote
KHDRBS1 Knockout HCT 116 Cell Line EDJ-KQ25401 Human 10657 Details Get a Quote
KHDRBS1 Knockout HeLa Cell Line EDJ-KQ25402 Human 10657 Details Get a Quote
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