ID2 Gene (Inhibitor of DNA Binding 2)
HLH Protein ID2: Transcriptional Regulator in Development and Cancer
Gene Information Card
| Symbol | ID2 |
|---|---|
| Full Name | Inhibitor of DNA Binding 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 2p25.1 |
| NCBI Gene ID | 3398 ncbi.nlm.nih.gov/gene/3398 |
| Ensembl ID | ENSG00000115738 |
| UniProt ID | Q02363 |
| OMIM ID | 600386 |
| HGNC ID | 5362 |
| Aliases | bHLHb26, ID2A, ID2H, GIG8 |
Description
ID2 (Inhibitor of DNA Binding 2) encodes a member of the inhibitor of DNA binding (ID) family of helix-loop-helix (HLH) proteins. ID2 lacks a basic DNA-binding domain and functions as a dominant-negative regulator of basic HLH transcription factors by forming heterodimers, thereby inhibiting their DNA binding and transcriptional activity. It plays critical roles in cell growth, differentiation, and apoptosis, particularly in neurogenesis, hematopoiesis, and immune cell development. Dysregulation of ID2 is implicated in various cancers, including neuroblastoma, breast cancer, and leukemia.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Neuroblastoma | ID2 overexpression inhibits differentiation and promotes proliferation by sequestering E-proteins (e.g., TCF3) | PMID: 10655551, COSMIC |
| Breast Cancer | ID2 upregulation correlates with poor prognosis and enhanced metastasis via modulation of E-cadherin and MMPs | PMID: 19029980, ClinVar |
| Acute Lymphoblastic Leukemia (ALL) | ID2 mutations and altered expression disrupt B-cell differentiation by impairing E2A function | PMID: 21832243, COSMIC |
| Autoimmune Lymphoproliferative Syndrome (ALPS) | ID2 variants may contribute to defective lymphocyte apoptosis | ClinVar, OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Lung | 8.3 | Low |
| Breast | 6.7 | Low |
| Bone Marrow | 15.2 | Medium |
| Lymph Node | 18.9 | Medium |
| Thymus | 22.1 | High |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK293 | 10.5 | Embryonic kidney, moderate expression |
| MCF7 | 8.2 | Breast cancer line, low expression |
| SH-SY5Y | 14.3 | Neuroblastoma, high expression |
| K562 | 12.0 | Leukemia, moderate expression |
| Jurkat | 16.7 | T-cell leukemia, high expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.172C>T (p.Arg58Trp) | Missense | <0.01% | Alters HLH domain, reduced dimerization |
| c.256_258del (p.Lys86del) | Deletion | <0.01% | In-frame deletion, loss of function |
| c.1A>G (p.Met1Val) | Start loss | <0.01% | Loss of translation initiation |
| c.331C>T (p.Arg111*) | Nonsense | <0.01% | Premature stop, loss of function |
Mutation functional classification
Loss of Function (LOF)
Most reported ID2 mutations (missense, nonsense, deletions) result in loss of function, impairing its ability to inhibit bHLH transcription factors, leading to dysregulated differentiation and proliferation.
Gain of Function (GOF)
No well-characterized gain-of-function mutations are documented in ID2.
Dominant Negative (DN)
ID2 itself acts as a dominant-negative regulator of bHLH factors; mutations that enhance its stability or binding affinity could theoretically act in a dominant-negative manner, but such variants are not reported.
View complete mutation data:
Gene Ontology (GO)
Pathways
• hsa:04350 - TGF-beta signaling pathway
• hsa:04110 - Cell cycle
• hsa:05200 - Pathways in cancer
• hsa:04650 - Natural killer cell mediated cytotoxicity
• hsa:04630 - JAK-STAT signaling pathway
Protein Summary
ID2 is a 134-amino acid HLH protein (UniProt Q02363) that lacks a basic DNA-binding domain. It functions by forming heterodimers with E-proteins (e.g., TCF3, TCF4, TCF12), preventing their binding to E-box sequences and thereby repressing transcription of genes involved in differentiation. ID2 is predominantly nuclear but can shuttle to the cytoplasm. It is highly expressed in developing neural tissues, hematopoietic cells, and certain cancers. Post-translational modifications include phosphorylation, which modulates its stability and interaction partners.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ID2 Knockout HEK293 Cell Line | EDJ-KQ383 | Human | 3398 | Details Get a Quote |
| ARID2 Knockout HEK293 Cell Line | EDJ-KQ2263 | Human | 196528 | Details Get a Quote |
| JARID2 Knockout HEK293 Cell Line | EDJ-KQ2474 | Human | 3720 | Details Get a Quote |
| NID2 Knockout HEK293 Cell Line | EDJ-KQ3713 | Human | 22795 | Details Get a Quote |
| GRID2 Knockout HEK293 Cell Line | EDJ-KQ4789 | Human | 2895 | Details Get a Quote |
| MID2 Knockout HEK293 Cell Line | EDJ-KQ6630 | Human | 11043 | Details Get a Quote |
| EID2B Knockout HEK293 Cell Line | EDJ-KQ8881 | Human | 126272 | Details Get a Quote |
| PRELID2 Knockout HEK293 Cell Line | EDJ-KQ11537 | Human | 153768 | Details Get a Quote |
| EID2 Knockout HEK293 Cell Line | EDJ-KQ13267 | Human | 163126 | Details Get a Quote |
| GRID2IP Knockout HEK293 Cell Line | EDJ-KQ13685 | Human | 392862 | Details Get a Quote |
| ITPRID2 Knockout HEK293 Cell Line | EDJ-KQ13871 | Human | 6744 | Details Get a Quote |
| ARID2 Knockout HeLa Cell Line | EDJ-KQ18173 | Human | 196528 | Details Get a Quote |
| JARID2 Knockout HCT 116 Cell Line | EDJ-KQ23039 | Human | 3720 | Details Get a Quote |
| JARID2 Knockout HeLa Cell Line | EDJ-KQ23040 | Human | 3720 | Details Get a Quote |
| EID2B Knockout HeLa Cell Line | EDJ-KQ33973 | Human | 126272 | Details Get a Quote |
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