ID2 Gene (Inhibitor of DNA Binding 2)

HLH Protein ID2: Transcriptional Regulator in Development and Cancer

Gene Information Card

Symbol ID2
Full Name Inhibitor of DNA Binding 2
Gene Type Protein coding
Chromosomal Location 2p25.1
NCBI Gene ID 3398 ncbi.nlm.nih.gov/gene/3398
Ensembl ID ENSG00000115738
UniProt ID Q02363
OMIM ID 600386
HGNC ID 5362
Aliases bHLHb26, ID2A, ID2H, GIG8

Description

ID2 (Inhibitor of DNA Binding 2) encodes a member of the inhibitor of DNA binding (ID) family of helix-loop-helix (HLH) proteins. ID2 lacks a basic DNA-binding domain and functions as a dominant-negative regulator of basic HLH transcription factors by forming heterodimers, thereby inhibiting their DNA binding and transcriptional activity. It plays critical roles in cell growth, differentiation, and apoptosis, particularly in neurogenesis, hematopoiesis, and immune cell development. Dysregulation of ID2 is implicated in various cancers, including neuroblastoma, breast cancer, and leukemia.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Neuroblastoma ID2 overexpression inhibits differentiation and promotes proliferation by sequestering E-proteins (e.g., TCF3) PMID: 10655551, COSMIC
Breast Cancer ID2 upregulation correlates with poor prognosis and enhanced metastasis via modulation of E-cadherin and MMPs PMID: 19029980, ClinVar
Acute Lymphoblastic Leukemia (ALL) ID2 mutations and altered expression disrupt B-cell differentiation by impairing E2A function PMID: 21832243, COSMIC
Autoimmune Lymphoproliferative Syndrome (ALPS) ID2 variants may contribute to defective lymphocyte apoptosis ClinVar, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.5 Medium
Lung 8.3 Low
Breast 6.7 Low
Bone Marrow 15.2 Medium
Lymph Node 18.9 Medium
Thymus 22.1 High
Cell Line Expression
Cell Line nTPM Notes
HEK293 10.5 Embryonic kidney, moderate expression
MCF7 8.2 Breast cancer line, low expression
SH-SY5Y 14.3 Neuroblastoma, high expression
K562 12.0 Leukemia, moderate expression
Jurkat 16.7 T-cell leukemia, high expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.172C>T (p.Arg58Trp) Missense <0.01% Alters HLH domain, reduced dimerization
c.256_258del (p.Lys86del) Deletion <0.01% In-frame deletion, loss of function
c.1A>G (p.Met1Val) Start loss <0.01% Loss of translation initiation
c.331C>T (p.Arg111*) Nonsense <0.01% Premature stop, loss of function
Mutation functional classification

Loss of Function (LOF)

Most reported ID2 mutations (missense, nonsense, deletions) result in loss of function, impairing its ability to inhibit bHLH transcription factors, leading to dysregulated differentiation and proliferation.

Gain of Function (GOF)

No well-characterized gain-of-function mutations are documented in ID2.

Dominant Negative (DN)

ID2 itself acts as a dominant-negative regulator of bHLH factors; mutations that enhance its stability or binding affinity could theoretically act in a dominant-negative manner, but such variants are not reported.

Pathways

hsa:04350 - TGF-beta signaling pathway
hsa:04110 - Cell cycle
hsa:05200 - Pathways in cancer
hsa:04650 - Natural killer cell mediated cytotoxicity
hsa:04630 - JAK-STAT signaling pathway

Protein Summary

ID2 is a 134-amino acid HLH protein (UniProt Q02363) that lacks a basic DNA-binding domain. It functions by forming heterodimers with E-proteins (e.g., TCF3, TCF4, TCF12), preventing their binding to E-box sequences and thereby repressing transcription of genes involved in differentiation. ID2 is predominantly nuclear but can shuttle to the cytoplasm. It is highly expressed in developing neural tissues, hematopoietic cells, and certain cancers. Post-translational modifications include phosphorylation, which modulates its stability and interaction partners.

Related Products

Product name Cat.No. Species Gene ID
ID2 Knockout HEK293 Cell Line EDJ-KQ383 Human 3398 Details Get a Quote
ARID2 Knockout HEK293 Cell Line EDJ-KQ2263 Human 196528 Details Get a Quote
JARID2 Knockout HEK293 Cell Line EDJ-KQ2474 Human 3720 Details Get a Quote
NID2 Knockout HEK293 Cell Line EDJ-KQ3713 Human 22795 Details Get a Quote
GRID2 Knockout HEK293 Cell Line EDJ-KQ4789 Human 2895 Details Get a Quote
MID2 Knockout HEK293 Cell Line EDJ-KQ6630 Human 11043 Details Get a Quote
EID2B Knockout HEK293 Cell Line EDJ-KQ8881 Human 126272 Details Get a Quote
PRELID2 Knockout HEK293 Cell Line EDJ-KQ11537 Human 153768 Details Get a Quote
EID2 Knockout HEK293 Cell Line EDJ-KQ13267 Human 163126 Details Get a Quote
GRID2IP Knockout HEK293 Cell Line EDJ-KQ13685 Human 392862 Details Get a Quote
ITPRID2 Knockout HEK293 Cell Line EDJ-KQ13871 Human 6744 Details Get a Quote
ARID2 Knockout HeLa Cell Line EDJ-KQ18173 Human 196528 Details Get a Quote
JARID2 Knockout HCT 116 Cell Line EDJ-KQ23039 Human 3720 Details Get a Quote
JARID2 Knockout HeLa Cell Line EDJ-KQ23040 Human 3720 Details Get a Quote
EID2B Knockout HeLa Cell Line EDJ-KQ33973 Human 126272 Details Get a Quote
Displaying Records 1 To 15 Of 47 Records
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