H4C1 (H4 Clustered Histone 1): A Core Histone Gene in Chromatin Regulation

Essential component of the nucleosome, implicated in cancer and developmental disorders

Gene Information Card

Symbol H4C1
Full Name H4 clustered histone 1
Gene Type protein-coding
Chromosomal Location 6p22.1
NCBI Gene ID 8359 ncbi.nlm.nih.gov/gene/8359
Ensembl ID ENSG00000274620
UniProt ID P62805
OMIM ID 602822
HGNC ID 4781
Aliases H4/A, H4FA, HIST1H4A

Description

H4C1 encodes histone H4, one of the five main histone proteins that package DNA into nucleosomes. Histone H4, along with H2A, H2B, and H3, forms the core of the nucleosome, the fundamental repeating unit of chromatin. H4C1 is a replication-dependent histone gene, expressed during S-phase and incorporated into newly synthesized chromatin. Post-translational modifications of H4, such as acetylation and methylation, play critical roles in gene regulation, DNA repair, and chromosome condensation. Mutations or aberrant expression of H4C1 have been linked to various cancers and developmental syndromes.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) Altered expression or mutations in H4C1 can disrupt chromatin structure and gene regulation, contributing to tumorigenesis. COSMIC database lists somatic mutations in H4C1 across multiple cancer types; ClinVar reports variants associated with cancer susceptibility.
Developmental disorders Germline mutations in H4C1 may affect chromatin remodeling during development, leading to congenital anomalies. ClinVar includes pathogenic variants in H4C1 linked to neurodevelopmental phenotypes.
Immunodeficiency Histone H4 variants can impact immune cell function and antibody production. OMIM notes allelic variants with immune-related phenotypes.

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 30.2 High
Bone marrow 25.1 High
Lymph node 20.5 Medium
Brain 8.3 Low
Liver 5.4 Low
Cell Line Expression
Cell Line nTPM Notes
K-562 45.6 Leukemia cell line; high expression
HeLa 38.2 Cervical cancer; high expression
A549 22.4 Lung carcinoma; moderate expression
HUVEC 12.1 Endothelial; low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
p.Gly52Asp Missense 0.01% May affect histone fold domain, altering nucleosome stability
p.Arg92His Missense 0.005% Potential impact on post-translational modification sites
c.1-1G>A Splice site Rare Likely loss of function due to aberrant splicing
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations in H4C1 are rare but may lead to haploinsufficiency, affecting chromatin assembly and gene expression, potentially contributing to developmental defects.

Gain of Function (GOF)

Gain-of-function mutations are not well-documented; however, some missense variants may alter histone modification patterns, leading to aberrant gene activation.

Dominant Negative (DN)

Dominant-negative effects are possible if mutant H4 proteins incorporate into nucleosomes and disrupt chromatin structure, interfering with normal histone function.

Gene Ontology (GO)

• DNA binding • protein heterodimerization activity
• nucleosome assembly • chromatin organization
• nucleus • chromosome

Pathways

• Packaging Of Telomere Ends
• Chromatin organization
• Senescence-Associated Secretory Phenotype (SASP)

Protein Summary

Histone H4 is a highly conserved protein of 103 amino acids, featuring a globular histone fold domain and a flexible N-terminal tail. It forms a tetramer with histone H3, which is the core of the nucleosome. The N-terminal tail is subject to extensive post-translational modifications, including acetylation at lysine residues (e.g., K16) and methylation at arginine and lysine residues, which regulate chromatin dynamics and gene expression. H4 is essential for DNA packaging and chromosome integrity.

Related Products

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