GPD1: Glycerol-3-Phosphate Dehydrogenase 1
Key enzyme in glycerol metabolism and triglyceride synthesis
Gene Information Card
| Symbol | GPD1 |
|---|---|
| Full Name | Glycerol-3-Phosphate Dehydrogenase 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 12q13.12 |
| NCBI Gene ID | 2819 ncbi.nlm.nih.gov/gene/2819 |
| Ensembl ID | ENSG00000167588 |
| UniProt ID | P21695 |
| OMIM ID | 138420 |
| HGNC ID | 4455 |
| Aliases | GPD-C, GPDH-C, HTGTI |
Description
The GPD1 gene encodes the cytosolic isoform of glycerol-3-phosphate dehydrogenase, a key enzyme that catalyzes the reversible conversion of dihydroxyacetone phosphate (DHAP) to glycerol-3-phosphate (G3P) using NADH as a cofactor. This reaction is essential for glycerol metabolism, triglyceride synthesis, and the glycerol-3-phosphate shuttle that transfers reducing equivalents from the cytosol to mitochondria. GPD1 is highly expressed in liver, adipose tissue, and skeletal muscle, and its deficiency leads to elevated serum triglycerides and glycerol levels.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| GPD1 deficiency (hypertriglyceridemia, transient infantile) | Loss-of-function mutations impair conversion of DHAP to G3P, leading to accumulation of glycerol and triglycerides in blood. | ClinVar, OMIM |
| Hypertriglyceridemia, familial | Reduced GPD1 activity disrupts triglyceride clearance and promotes hypertriglyceridemia. | OMIM, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 42.3 | High |
| Adipose tissue | 38.1 | High |
| Skeletal muscle | 25.7 | Medium |
| Kidney | 18.4 | Medium |
| Heart | 12.9 | Medium |
| Brain | 5.2 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 35.6 | Hepatocyte cell line |
| 3T3-L1 | 28.4 | Adipocyte cell line |
| C2C12 | 22.1 | Myoblast cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.361C>T (p.Arg121Trp) | Missense | Rare | Loss of enzymatic activity; associated with hypertriglyceridemia |
| c.494G>A (p.Arg165His) | Missense | Rare | Reduced catalytic efficiency; reported in GPD1 deficiency |
| c.1A>G (p.Met1Val) | Start loss | Very rare | Complete loss of protein; severe hypertriglyceridemia |
Mutation functional classification
Loss of Function (LOF)
Most reported GPD1 mutations are loss-of-function, reducing or abolishing enzymatic activity, leading to impaired glycerol metabolism and hypertriglyceridemia.
Gain of Function (GOF)
No gain-of-function mutations have been reported for GPD1.
Dominant Negative (DN)
No dominant-negative mutations have been described for GPD1.
View complete mutation data:
Gene Ontology (GO)
| • glycerol-3-phosphate dehydrogenase (NAD+) activity (GO:0004367) | • carbohydrate metabolic process (GO:0005975) |
| • glycerol-3-phosphate metabolic process (GO:0006072) | • cytoplasm (GO:0005737) |
| • cytosol (GO:0005829) | • glycerol catabolic process (GO:0019563) |
| • identical protein binding (GO:0042802) |
Pathways
• Glycerolipid metabolism (Reactome: R-HSA-8978868)
• Glycerol-3-phosphate shuttle (Reactome: R-HSA-1483191)
• Triglyceride biosynthesis (Reactome: R-HSA-75105)
• Metabolism of lipids (Reactome: R-HSA-556833)
Protein Summary
GPD1 encodes a 349-amino acid cytosolic protein that functions as a homodimer. It catalyzes the NADH-dependent reduction of dihydroxyacetone phosphate to glycerol-3-phosphate, a critical step in triglyceride synthesis and the glycerol-3-phosphate shuttle. The enzyme is highly expressed in metabolically active tissues such as liver, adipose, and muscle. Deficiency due to biallelic loss-of-function mutations causes transient infantile hypertriglyceridemia and elevated serum glycerol. The protein structure includes a Rossmann fold for NADH binding and a catalytic domain.
Related Services
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| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| GPD1 Knockout HEK293 Cell Line | EDJ-KQ3066 | Human | 2819 | Details Get a Quote |
| GPD1L Knockout HEK293 Cell Line | EDJ-KQ3743 | Human | 23171 | Details Get a Quote |
| GPD1 Knockout HCT 116 Cell Line | EDJ-KQ24335 | Human | 2819 | Details Get a Quote |
| GPD1L Knockout A-549 Cell Line | EDJ-KQ25807 | Human | 23171 | Details Get a Quote |
| GPD1L Knockout HCT 116 Cell Line | EDJ-KQ25808 | Human | 23171 | Details Get a Quote |
| GPD1L Knockout HeLa Cell Line | EDJ-KQ25809 | Human | 23171 | Details Get a Quote |
| GPD1 Knockout HeLa Cell Line | EDJ-KQ53381 | Human | 2819 | Details Get a Quote |
| GPD1 Knockout A-549 Cell Line | EDJ-KQ61857 | Human | 2819 | Details Get a Quote |