GABRA2

Gamma-aminobutyric acid type A receptor subunit alpha2

Gene Information Card

Symbol GABRA2
Full Name gamma-aminobutyric acid type A receptor subunit alpha2
Gene Type protein-coding
Chromosomal Location 4p12
NCBI Gene ID 2555 ncbi.nlm.nih.gov/gene/2555
Ensembl ID ENSG00000151834
UniProt ID P47869
OMIM ID 137140
HGNC ID 4076
Aliases GABA(A) receptor subunit alpha-2

Description

GABRA2 (gamma-aminobutyric acid type A receptor subunit alpha2) is a protein-coding gene that encodes the alpha2 subunit of the GABA-A receptor. This receptor is a pentameric ligand-gated chloride channel that mediates fast inhibitory neurotransmission in the central nervous system. The alpha2 subunit is particularly enriched in brain regions involved in anxiety, reward, and memory, such as the hippocampus, amygdala, and striatum. Variants in GABRA2 have been associated with epilepsy, alcohol dependence, and anxiety disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Epilepsy, childhood absence Loss-of-function variants reduce inhibitory neurotransmission, leading to neuronal hyperexcitability ClinVar, OMIM
Alcohol dependence Polymorphisms in GABRA2 alter receptor sensitivity to ethanol, influencing reward and withdrawal NCBI, PubMed
Anxiety disorders Altered alpha2 subunit expression modulates GABAergic tone in limbic circuits OMIM, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 12.5 High
Hippocampus 15.2 High
Amygdala 14.8 High
Cerebellum 8.3 Medium
Spinal cord 3.1 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y 6.7 Neuroblastoma cell line
SK-N-SH 5.9 Neuroblastoma cell line
HEK293 0.2 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.245G>A (p.Arg82His) Missense Rare Reduced channel conductance; associated with epilepsy
c.529C>T (p.Arg177Trp) Missense Rare Impaired receptor trafficking; linked to anxiety
c.1003G>A (p.Gly335Ser) Missense Rare Altered benzodiazepine sensitivity
Mutation functional classification

Loss of Function (LOF)

Missense variants (e.g., p.Arg82His) reduce chloride current amplitude or surface expression, leading to decreased inhibitory neurotransmission.

Gain of Function (GOF)

Not well documented for GABRA2; most pathogenic variants are loss-of-function.

Dominant Negative (DN)

Some missense mutations may exert dominant-negative effects by incorporating into pentamers and impairing function of wild-type subunits.

Gene Ontology (GO)

• GABA-gated chloride ion channel activity • extracellular ligand-gated ion channel activity
• chloride channel complex • postsynaptic membrane
• chemical synaptic transmission • nervous system development

Pathways

Neuroactive ligand-receptor interaction
GABAergic synapse
Nicotine addiction
Morphine addiction

Protein Summary

The GABRA2 protein (UniProt P47869) is 451 amino acids long and contains four transmembrane domains (M1-M4), a large extracellular N-terminal domain with a signal peptide, and an intracellular loop between M3 and M4 that mediates receptor clustering and modulation. It assembles with beta and gamma subunits to form functional GABA-A receptors. The alpha2 subunit confers high affinity for GABA and benzodiazepines, and its expression is critical for anxiety-related behaviors.

Related Products

Product name Cat.No. Species Gene ID
GABRA2 Knockout HEK293 Cell Line EDJ-KQ3900 Human 2555 Details Get a Quote
GABRA2 Knockout HeLa Cell Line EDJ-KQ53287 Human 2555 Details Get a Quote
GABRA2 Knockout A-549 Cell Line EDJ-KQ61769 Human 2555 Details Get a Quote
GABRA2 Knockout HCT 116 Cell Line EDJ-KQ70251 Human 2555 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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