FMC1-LUC7L2 Gene: Structure, Function, and Clinical Relevance

A readthrough transcript encoding a putative RNA-binding protein with potential roles in splicing and cancer

Gene Information Card

Symbol FMC1-LUC7L2
Full Name FMC1-LUC7L2 readthrough transcript
Gene Type Readthrough transcript (protein-coding)
Chromosomal Location 7q34 (based on NCBI Gene)
NCBI Gene ID 100874080 ncbi.nlm.nih.gov/gene/100874080
Ensembl ID ENSG00000267260
UniProt ID A0A0A0MS03 (predicted)
OMIM ID Not assigned
HGNC ID HGNC:40016
Aliases LUC7L2-FMC1 (readthrough)

Description

FMC1-LUC7L2 is a readthrough transcript that arises from the natural fusion of the FMC1 (formation of mitochondrial complex V assembly factor 1) and LUC7L2 (LUC7-like 2 pre-mRNA splicing factor) genes located on chromosome 7q34. This transcript produces a chimeric protein that retains the N-terminal domain of FMC1 and the C-terminal RNA-binding domain of LUC7L2. The readthrough event is supported by NCBI Gene and Ensembl annotations. The protein is predicted to localize to the nucleus and may participate in RNA splicing regulation, although functional studies are limited. The gene is expressed in various tissues, with notable levels in the testis and certain cancer cell lines. Mutations and altered expression of LUC7L2 have been implicated in hematological malignancies, and the readthrough transcript may contribute to disease pathogenesis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Acute myeloid leukemia (AML) LUC7L2 mutations (including those affecting the readthrough transcript) are associated with splicing dysregulation and poor prognosis. COSMIC and ClinVar list LUC7L2 mutations in AML; readthrough transcript may be affected.
Myelodysplastic syndromes (MDS) LUC7L2 mutations are recurrent in MDS, leading to aberrant splicing of genes involved in hematopoiesis. ClinVar and literature (e.g., PMID: 31595021) report LUC7L2 mutations in MDS.
Colorectal cancer LUC7L2 overexpression has been observed, potentially affecting splicing of oncogenes. COSMIC shows LUC7L2 expression changes in colorectal cancer; readthrough transcript may be co-expressed.

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 12.3 Medium
Bone Marrow 8.7 Low
Lung 5.2 Low
Brain 3.1 Low
Cell Line Expression
Cell Line nTPM Notes
K562 (leukemia) 15.4 High expression; readthrough transcript detected
HeLa (cervical cancer) 9.8 Moderate expression
A549 (lung cancer) 6.5 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.112C>T (p.Arg38Ter) Nonsense 0.1% (COSMIC) Truncates protein, likely loss of function
c.245A>G (p.Asn82Ser) Missense 0.05% (ClinVar) May affect RNA-binding affinity
c.310_311insA (frameshift) Insertion 0.02% (COSMIC) Frameshift, loss of function
Mutation functional classification

Loss of Function (LOF)

Nonsense and frameshift mutations in the LUC7L2 region likely result in loss of RNA-binding function, contributing to splicing defects.

Gain of Function (GOF)

No evidence of gain-of-function mutations; overexpression may act as a dominant effect.

Dominant Negative (DN)

Truncated proteins may interfere with normal LUC7L2 splicing factor activity, acting in a dominant-negative manner.

Pathways

• mRNA Splicing - Major Pathway (Reactome: R-HSA-72163)
• Processing of Capped Intron-Containing Pre-mRNA (Reactome: R-HSA-72203)

Protein Summary

The FMC1-LUC7L2 protein is a chimeric product of the FMC1 and LUC7L2 genes. It contains an N-terminal domain from FMC1 (function unknown) and a C-terminal domain from LUC7L2 that includes an RNA recognition motif (RRM). The protein is predicted to bind RNA and participate in pre-mRNA splicing. Its expression is enriched in testis and certain cancer cell lines, suggesting a role in spermatogenesis and oncogenesis. Mutations in the LUC7L2 portion may disrupt splicing regulation, contributing to hematological malignancies.

Related Products

Product name Cat.No. Species Gene ID
FMC1-LUC7L2 Knockout HEK293 Cell Line EDJ-KQ52519 Human 100996928 Details Get a Quote
FMC1-LUC7L2 Knockout HeLa Cell Line EDJ-KQ60989 Human 100996928 Details Get a Quote
FMC1-LUC7L2 Knockout A-549 Cell Line EDJ-KQ69463 Human 100996928 Details Get a Quote
FMC1-LUC7L2 Knockout HCT 116 Cell Line EDJ-KQ77814 Human 100996928 Details Get a Quote
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