FBXO40: F-box Protein 40 – A Muscle-Specific Ubiquitin Ligase Component
Comprehensive genomic and functional analysis of FBXO40, a muscle-enriched F-box protein involved in sarcomere assembly and muscle growth regulation.
Gene Information Card
| Symbol | FBXO40 |
|---|---|
| Full Name | F-box protein 40 |
| Gene Type | protein-coding |
| Chromosomal Location | 3q13.33 |
| NCBI Gene ID | 51725 ncbi.nlm.nih.gov/gene/51725 |
| Ensembl ID | ENSG00000163827 |
| UniProt ID | Q9UH90 |
| OMIM ID | 609107 |
| HGNC ID | 18797 |
| Aliases | FBX40, MGC138290, MGC138291 |
Description
FBXO40 encodes a member of the F-box protein family, characterized by an F-box domain. F-box proteins are components of the SCF (SKP1-CUL1-F-box) ubiquitin ligase complex, which targets proteins for ubiquitination and subsequent proteasomal degradation. FBXO40 is specifically expressed in skeletal muscle and plays a critical role in sarcomere assembly and muscle growth. It interacts with the sarcomeric protein α-actinin-2 and is involved in the ubiquitination of myosin heavy chain, thereby regulating muscle fiber size and contractile function.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Muscle atrophy | FBXO40-mediated ubiquitination of myosin heavy chain may be dysregulated, leading to accelerated muscle protein degradation | PMID: 19282290 |
| Cardiomyopathy | Altered FBXO40 expression in cardiac muscle may affect sarcomere integrity and contractility | PMID: 23505220 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Skeletal muscle | 48.2 | High |
| Heart | 12.1 | Medium |
| Testis | 3.5 | Low |
| Brain | 0.8 | Not detected |
| Liver | 0.2 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| LHCN-M2 (skeletal muscle myoblasts) | 35.6 | Differentiated myotubes show higher expression |
| C2C12 (mouse myoblasts) | 42.1 | Upregulated during myogenesis |
| HeLa | 0.5 | Negligible expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1045C>T (p.Arg349*) | Nonsense | <0.01% | Premature truncation; loss of F-box domain function |
| c.782G>A (p.Arg261His) | Missense | 0.02% | Reduced binding to SKP1; impaired SCF complex assembly |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations that truncate the F-box domain or disrupt SKP1 binding lead to loss of ubiquitin ligase activity, impairing sarcomere protein turnover.
Gain of Function (GOF)
No gain-of-function mutations have been reported for FBXO40.
Dominant Negative (DN)
Missense mutations that retain substrate binding but fail to recruit the SCF complex may act as dominant negatives, blocking normal ubiquitination.
View complete mutation data:
Gene Ontology (GO)
| • protein binding (GO:0005515) | • ubiquitin-dependent protein catabolic process (GO:0006511) |
| • protein ubiquitination (GO:0016567) | • SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146) |
| • contractile fiber (GO:0043292) | • sarcomere (GO:0030017) |
Pathways
• SCF ubiquitin ligase complex pathway (Reactome: R-HSA-8951664)
• Ubiquitin-mediated proteolysis (KEGG: hsa04120)
• Muscle contraction and sarcomere assembly (Reactome: R-HSA-397014)
Protein Summary
FBXO40 is a 574-amino acid protein containing an N-terminal F-box domain (residues 30–75) and a C-terminal domain that mediates substrate recognition. It is a core component of the SCF ubiquitin ligase complex, where it recruits specific substrates for ubiquitination. In skeletal muscle, FBXO40 targets myosin heavy chain and other sarcomeric proteins for degradation, thereby regulating muscle fiber size and contractile protein turnover. The protein is predominantly localized to the sarcomere and interacts with α-actinin-2.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| FBXO40 Knockout HEK293 Cell Line | EDJ-KQ11204 | Human | 51725 | Details Get a Quote |
| FBXO40 Knockout HeLa Cell Line | EDJ-KQ56352 | Human | 51725 | Details Get a Quote |
| FBXO40 Knockout A-549 Cell Line | EDJ-KQ64842 | Human | 51725 | Details Get a Quote |
| FBXO40 Knockout HCT 116 Cell Line | EDJ-KQ73286 | Human | 51725 | Details Get a Quote |