ETNK1: Ethanolamine Kinase 1 – A Key Enzyme in Phospholipid Metabolism and Emerging Oncogene
Comprehensive genomic, functional, and clinical overview of ETNK1, including its role in phosphatidylethanolamine synthesis, somatic mutations in myeloid neoplasms, and tissue-specific expression.
Gene Information Card
| Symbol | ETNK1 |
|---|---|
| Full Name | Ethanolamine Kinase 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 12p12.1 |
| NCBI Gene ID | 55500 ncbi.nlm.nih.gov/gene/55500 |
| Ensembl ID | ENSG00000139163 |
| UniProt ID | Q9HBU6 |
| OMIM ID | 616282 |
| HGNC ID | 24637 |
| Aliases | EK1, EKI, MGC138499, MGC138500 |
Description
ETNK1 (ethanolamine kinase 1) encodes a cytosolic enzyme that catalyzes the first committed step in the Kennedy pathway of phosphatidylethanolamine (PE) synthesis, phosphorylating ethanolamine to phosphoethanolamine. The gene is located on chromosome 12p12.1 and is widely expressed, with highest levels in the liver, kidney, and testis. Recurrent somatic missense mutations (e.g., N244S, N244T) have been identified in patients with atypical chronic myeloid leukemia (aCML) and other myelodysplastic/myeloproliferative neoplasms (MDS/MPN), leading to increased enzymatic activity and altered phospholipid homeostasis. ETNK1 is considered a potential oncogene in myeloid malignancies.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Atypical chronic myeloid leukemia (aCML) | Recurrent ETNK1 mutations (N244S/T) increase kinase activity, leading to elevated phosphoethanolamine levels and dysregulated cell signaling. | PMID: 26026707; COSMIC; ClinVar |
| Myelodysplastic/myeloproliferative neoplasms (MDS/MPN) | Somatic ETNK1 mutations co-occur with ASXL1, SRSF2, and TET2 mutations, contributing to clonal hematopoiesis. | PMID: 26026707; PMID: 27520212 |
| Acute myeloid leukemia (AML) | Rare ETNK1 mutations reported in AML cases, suggesting a broader role in leukemogenesis. | COSMIC; PMID: 27520212 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 38.2 | High |
| Kidney | 32.5 | High |
| Testis | 28.1 | High |
| Brain | 15.3 | Medium |
| Heart | 12.7 | Medium |
| Lung | 8.9 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK293 | 45.6 | Embryonic kidney cells; high expression |
| HepG2 | 52.3 | Hepatocellular carcinoma; highest among cancer lines |
| K562 | 22.1 | Chronic myeloid leukemia; moderate expression |
| THP-1 | 18.4 | Acute monocytic leukemia; moderate expression |
| HL-60 | 15.2 | Acute promyelocytic leukemia; moderate expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| N244S | Missense | ~2% in aCML | Gain-of-function; increased ethanolamine kinase activity |
| N244T | Missense | ~1% in aCML | Gain-of-function; similar to N244S |
| G90R | Missense | <0.1% | Unknown functional effect; rare |
| R175Q | Missense | <0.1% | Unknown functional effect; rare |
Mutation functional classification
Loss of Function (LOF)
No confirmed loss-of-function mutations reported in human disease.
Gain of Function (GOF)
Recurrent N244S and N244T mutations increase kinase activity, leading to elevated phosphoethanolamine levels.
Dominant Negative (DN)
No evidence of dominant-negative effects.
View complete mutation data:
Gene Ontology (GO)
| • ethanolamine kinase activity (GO:0004305) | • phosphatidylethanolamine biosynthetic process (GO:0006646) |
| • cytoplasm (GO:0005737) | • ATP binding (GO:0005524) |
| • phosphorylation (GO:0016310) |
Pathways
• Kennedy pathway (phosphatidylethanolamine biosynthesis)
• Glycerophospholipid metabolism
Protein Summary
Ethanolamine kinase 1 (ETNK1) is a 45 kDa cytosolic enzyme that phosphorylates ethanolamine using ATP, producing phosphoethanolamine. This is the rate-limiting step in the Kennedy pathway for phosphatidylethanolamine (PE) synthesis, a major membrane phospholipid. The protein contains a conserved choline/ethanolamine kinase domain. Gain-of-function mutations at residue N244 (N244S/T) enhance catalytic activity, leading to increased phosphoethanolamine levels, which may promote cell proliferation and survival in myeloid neoplasms. ETNK1 is also implicated in lipid signaling and membrane biogenesis.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ETNK1 Knockout HEK293 Cell Line | EDJ-KQ13335 | Human | 55500 | Details Get a Quote |
| ETNK1 Knockout A-549 Cell Line | EDJ-KQ41574 | Human | 55500 | Details Get a Quote |
| ETNK1 Knockout HCT 116 Cell Line | EDJ-KQ42807 | Human | 55500 | Details Get a Quote |
| ETNK1 Knockout HeLa Cell Line | EDJ-KQ42808 | Human | 55500 | Details Get a Quote |
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