DDX4: DEAD-Box Helicase 4 – A Key Regulator of Germ Cell Development
Comprehensive genomic and proteomic overview of DDX4, a germline-specific RNA helicase implicated in fertility and cancer.
Gene Information Card
| Symbol | DDX4 |
|---|---|
| Full Name | DEAD-box helicase 4 |
| Gene Type | Protein coding |
| Chromosomal Location | 5q11.2 |
| NCBI Gene ID | 54514 ncbi.nlm.nih.gov/gene/54514 |
| Ensembl ID | ENSG00000152670 |
| UniProt ID | Q9NQI0 |
| OMIM ID | 608353 |
| HGNC ID | 18700 |
| Aliases | VASA, MGC111074, DEAD-box protein 4, germ cell-specific helicase |
Description
DDX4 (DEAD-box helicase 4) encodes an ATP-dependent RNA helicase belonging to the DEAD-box protein family. It is specifically expressed in germ cells and is essential for gametogenesis, including spermatogenesis and oogenesis. DDX4 is involved in RNA metabolism, including translation initiation, RNA splicing, and ribosome biogenesis. Mutations and altered expression of DDX4 are associated with infertility and certain cancers, particularly germ cell tumors.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Spermatogenic failure | Loss-of-function mutations impair RNA helicase activity, disrupting spermatogenesis | OMIM 608353; PMID: 19559396 |
| Ovarian insufficiency | Reduced DDX4 expression leads to defective oocyte development | OMIM 608353; PMID: 23352259 |
| Testicular germ cell tumor | Overexpression or aberrant splicing may contribute to tumorigenesis | COSMIC; PMID: 21910217 |
| Ovarian cancer | DDX4 upregulation in ovarian germ cell tumors; potential biomarker | COSMIC; PMID: 24633160 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 48.2 | High |
| Ovary | 12.5 | Medium |
| Fallopian tube | 0.8 | Low |
| Prostate | 0.3 | Low |
| Breast | 0.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| NTERA-2 (testicular embryonal carcinoma) | 35.6 | High expression; germ cell origin |
| OVCAR-3 (ovarian adenocarcinoma) | 2.1 | Low expression |
| HeLa (cervical carcinoma) | 0.0 | Not detected |
| A549 (lung carcinoma) | 0.0 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1003C>T (p.Arg335Ter) | Nonsense | Rare | Loss of function; associated with spermatogenic failure |
| c.1426G>A (p.Gly476Arg) | Missense | Rare | Impaired helicase activity; linked to azoospermia |
| c.1960_1961del (p.Leu654fs) | Frameshift | Rare | Truncated protein; loss of function |
| c.2152A>G (p.Thr718Ala) | Missense | 0.01% (gnomAD) | Unknown significance; possibly benign |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations (e.g., p.Arg335Ter, p.Leu654fs) cause premature truncation, abolishing helicase activity and leading to germ cell failure.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported in DDX4.
Dominant Negative (DN)
Missense mutations (e.g., p.Gly476Arg) may produce a defective protein that interferes with wild-type DDX4 function, though dominant-negative effects are not well established.
View complete mutation data:
Gene Ontology (GO)
| • ATP binding | • ATP-dependent RNA helicase activity |
| • RNA binding | • helicase activity |
| • nucleic acid binding | • cytoplasm |
| • germ cell nucleus | • P-body |
| • germ cell development | • spermatogenesis |
| • oogenesis | • regulation of translation |
| • RNA secondary structure unwinding |
Pathways
• RNA helicase activity in germ cell development
• PIWI-interacting RNA (piRNA) pathway (indirect)
• mRNA surveillance pathway
Protein Summary
DDX4 (VASA) is a 724-amino acid DEAD-box RNA helicase predominantly expressed in germ cells. It contains conserved helicase domains (DEADc and HELICc) and an RGG box for RNA binding. The protein localizes to cytoplasmic granules (P-bodies) and the nucleus, where it unwinds RNA secondary structures to facilitate translation and RNA metabolism. DDX4 is essential for germline specification and maintenance; its absence leads to sterility in model organisms. In humans, DDX4 mutations cause non-obstructive azoospermia and premature ovarian failure. Overexpression is observed in germ cell tumors, making it a potential diagnostic marker.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| DDX4 Knockout HEK293 Cell Line | EDJ-KQ11448 | Human | 54514 | Details Get a Quote |
| DDX43 Knockout HEK293 Cell Line | EDJ-KQ13116 | Human | 55510 | Details Get a Quote |
| DDX4 Knockout HeLa Cell Line | EDJ-KQ56428 | Human | 54514 | Details Get a Quote |
| DDX43 Knockout HeLa Cell Line | EDJ-KQ56591 | Human | 55510 | Details Get a Quote |
| DDX4 Knockout A-549 Cell Line | EDJ-KQ64924 | Human | 54514 | Details Get a Quote |
| DDX43 Knockout A-549 Cell Line | EDJ-KQ65090 | Human | 55510 | Details Get a Quote |
| DDX4 Knockout HCT 116 Cell Line | EDJ-KQ73365 | Human | 54514 | Details Get a Quote |
| DDX43 Knockout HCT 116 Cell Line | EDJ-KQ73537 | Human | 55510 | Details Get a Quote |
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