DDX28: DEAD-Box Helicase 28, Mitochondrial RNA Granule Component
A mitochondrial DEAD-box RNA helicase involved in ribosome biogenesis and RNA metabolism
Gene Information Card
| Symbol | DDX28 |
|---|---|
| Full Name | DEAD-Box Helicase 28 |
| Gene Type | Protein coding |
| Chromosomal Location | 16q22.1 |
| NCBI Gene ID | 55794 ncbi.nlm.nih.gov/gene/55794 |
| Ensembl ID | ENSG00000103175 |
| UniProt ID | Q9NUL7 |
| OMIM ID | 616162 |
| HGNC ID | 17372 |
| Aliases | MDDX28, DDX28_HUMAN |
Description
DDX28 (DEAD-Box Helicase 28) encodes a member of the DEAD-box family of RNA helicases, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD). The protein localizes to mitochondria, specifically to mitochondrial RNA granules, where it plays a critical role in mitochondrial ribosome biogenesis and RNA metabolism. DDX28 is essential for the processing and maturation of mitochondrial ribosomal RNAs (rRNAs) and the assembly of the mitochondrial large ribosomal subunit. It interacts with other mitochondrial RNA granule components such as DHX30 and FASTKD2. Loss of DDX28 leads to impaired mitochondrial translation and respiratory chain dysfunction.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Mitochondrial respiratory chain deficiency | Impaired mitochondrial ribosome biogenesis due to DDX28 loss leads to defective translation of mtDNA-encoded subunits of oxidative phosphorylation complexes. | Experimental evidence from knockout cell models (PMID: 25781180, 26071605) |
| Combined oxidative phosphorylation deficiency | DDX28 mutations may contribute to mitochondrial disorders with combined OXPHOS defects, though specific germline mutations in humans are not yet well characterized. | Inferred from functional studies; no confirmed pathogenic germline variants in ClinVar as of 2025 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Heart | 12.5 | Medium |
| Skeletal Muscle | 10.8 | Medium |
| Liver | 8.2 | Medium |
| Kidney | 7.6 | Medium |
| Brain | 6.4 | Low |
| Lung | 5.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 15.3 | High expression; commonly used for mitochondrial studies |
| HEK293 | 12.1 | High expression |
| HepG2 | 9.8 | Medium expression |
| K562 | 6.2 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense (start loss) | Rare | Predicted loss of translation initiation; no confirmed clinical cases |
| c.100C>T (p.Arg34Trp) | Missense | Rare | Unknown significance; not reported in ClinVar as pathogenic |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations (e.g., knockout or severe missense) impair mitochondrial ribosome assembly, leading to reduced mitochondrial translation and OXPHOS deficiency.
Gain of Function (GOF)
No gain-of-function mutations reported for DDX28.
Dominant Negative (DN)
No dominant-negative mutations reported for DDX28.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Mitochondrial ribosome biogenesis
• Mitochondrial RNA metabolism
• Oxidative phosphorylation (indirect)
Protein Summary
DDX28 is a 60 kDa mitochondrial DEAD-box RNA helicase (UniProt Q9NUL7) that localizes to mitochondrial RNA granules. It contains a conserved DEAD-box helicase domain and an N-terminal mitochondrial targeting sequence. The protein unwinds RNA secondary structures in an ATP-dependent manner and is essential for the processing of mitochondrial 16S rRNA and assembly of the mitochondrial large ribosomal subunit (mtLSU). DDX28 interacts with DHX30, FASTKD2, and other RNA granule components. Its expression is highest in tissues with high oxidative metabolism, such as heart and skeletal muscle. Loss of DDX28 in cellular models causes severe mitochondrial translation defects and respiratory chain dysfunction.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| DDX28 Knockout HEK293 Cell Line | EDJ-KQ13114 | Human | 55794 | Details Get a Quote |
| DDX28 Knockout A-549 Cell Line | EDJ-KQ42423 | Human | 55794 | Details Get a Quote |
| DDX28 Knockout HCT 116 Cell Line | EDJ-KQ42424 | Human | 55794 | Details Get a Quote |
| DDX28 Knockout HeLa Cell Line | EDJ-KQ42425 | Human | 55794 | Details Get a Quote |