CRBN Gene: Cereblon

A key substrate receptor of the E3 ubiquitin ligase complex, involved in thalidomide teratogenicity and targeted by immunomodulatory drugs (IMiDs).

Gene Information Card

Symbol CRBN
Full Name Cereblon
Gene Type Protein coding
Chromosomal Location 3p26.2
NCBI Gene ID 51185 ncbi.nlm.nih.gov/gene/51185
Ensembl ID ENSG00000113851
UniProt ID Q96SW2
OMIM ID 609262
HGNC ID 30185
Aliases MRT2A

Description

The CRBN gene encodes cereblon, a protein that forms an E3 ubiquitin ligase complex with damaged DNA binding protein 1 (DDB1) and cullin-4A (CUL4A). This complex ubiquitinates target proteins for proteasomal degradation. CRBN is the primary target of thalidomide and its analogs (lenalidomide, pomalidomide), which alter its substrate specificity, leading to degradation of transcription factors such as IKZF1 and IKZF3. Loss-of-function mutations in CRBN cause autosomal recessive non-syndromic intellectual disability (MRT2A).

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Autosomal recessive non-syndromic intellectual disability (MRT2A) Loss-of-function mutations impair ubiquitin ligase activity, disrupting neuronal development OMIM #609262
Multiple myeloma (therapeutic target) IMiDs bind CRBN, redirecting the E3 ligase to degrade IKZF1/IKZF3, leading to myeloma cell death ClinVar, COSMIC
5q- myelodysplastic syndrome (therapeutic target) Lenalidomide-induced degradation of casein kinase 1A1 (CSNK1A1) via CRBN selectively kills del(5q) clones ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 24.5 High
Brain (cerebellum) 18.2 High
Brain (cortex) 15.8 High
Heart 12.1 Medium
Liver 9.3 Medium
Kidney 8.7 Medium
Lung 6.4 Low
Pancreas 5.1 Low
Cell Line Expression
Cell Line nTPM Notes
K-562 (leukemia) 14.2 High expression
HeLa (cervical) 12.8 High expression
HEK 293 (embryonic kidney) 11.5 High expression
MCF7 (breast) 9.1 Medium expression
HepG2 (liver) 7.6 Medium expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1274C>T (p.R419X) Nonsense Rare Loss of function; associated with intellectual disability
c.413C>T (p.R138X) Nonsense Rare Loss of function; associated with intellectual disability
c.1A>G (p.M1V) Missense Rare Loss of function; associated with intellectual disability
c.1085G>A (p.R362Q) Missense Rare Loss of function; associated with intellectual disability
Mutation functional classification

Loss of Function (LOF)

Nonsense and missense mutations (e.g., p.R419X, p.R138X, p.M1V) disrupt CRBN's ability to form a functional E3 ubiquitin ligase complex, leading to autosomal recessive intellectual disability.

Gain of Function (GOF)

Not described in germline; IMiD binding redirects CRBN to degrade neosubstrates (e.g., IKZF1, IKZF3), which is a pharmacologically induced gain-of-function.

Dominant Negative (DN)

Not reported for CRBN.

Gene Ontology (GO)

• GO:0004842 - ubiquitin-protein transferase activity • GO:0006511 - ubiquitin-dependent protein catabolic process
• GO:0005634 - nucleus • GO:0005829 - cytosol
• GO:0031625 - ubiquitin protein ligase binding • GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process

Pathways

Ubiquitin mediated proteolysis (KEGG: hsa04120)
CUL4A-DDB1-CRBN E3 ligase complex pathway

Protein Summary

Cereblon is a 442-amino acid protein that functions as a substrate receptor in the CUL4A-DDB1-RBX1 E3 ubiquitin ligase complex. It contains a Lon protease-like domain and a thalidomide-binding domain. Binding of immunomodulatory drugs (IMiDs) such as lenalidomide alters the substrate specificity of the complex, leading to ubiquitination and degradation of neosubstrates like IKZF1 and IKZF3. This mechanism underlies the therapeutic effects of IMiDs in multiple myeloma and del(5q) MDS. Loss-of-function mutations cause autosomal recessive intellectual disability (MRT2A).

Related Products

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CRBN Knockout HEK293 Cell Line EDC90033 Human 51185 Details Get a Quote
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CRBN Knockout HCT 116 Cell Line EDJ-KQ42256 Human 51185 Details Get a Quote
CRBN Knockout HeLa Cell Line EDC90160 Human 51185 Details Get a Quote
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CRBN Knockout MCF-7 Cell Line EDJ-KQ78084 Human 51185 Details Get a Quote
CRBN Knockout MOLT-4 Cell Line EDJ-KQ78086 Human 51185 Details Get a Quote
Displaying Records 1 To 8 Of 8 Records
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