CRBN Gene: Cereblon
A key substrate receptor of the E3 ubiquitin ligase complex, involved in thalidomide teratogenicity and targeted by immunomodulatory drugs (IMiDs).
Gene Information Card
| Symbol | CRBN |
|---|---|
| Full Name | Cereblon |
| Gene Type | Protein coding |
| Chromosomal Location | 3p26.2 |
| NCBI Gene ID | 51185 ncbi.nlm.nih.gov/gene/51185 |
| Ensembl ID | ENSG00000113851 |
| UniProt ID | Q96SW2 |
| OMIM ID | 609262 |
| HGNC ID | 30185 |
| Aliases | MRT2A |
Description
The CRBN gene encodes cereblon, a protein that forms an E3 ubiquitin ligase complex with damaged DNA binding protein 1 (DDB1) and cullin-4A (CUL4A). This complex ubiquitinates target proteins for proteasomal degradation. CRBN is the primary target of thalidomide and its analogs (lenalidomide, pomalidomide), which alter its substrate specificity, leading to degradation of transcription factors such as IKZF1 and IKZF3. Loss-of-function mutations in CRBN cause autosomal recessive non-syndromic intellectual disability (MRT2A).
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autosomal recessive non-syndromic intellectual disability (MRT2A) | Loss-of-function mutations impair ubiquitin ligase activity, disrupting neuronal development | OMIM #609262 |
| Multiple myeloma (therapeutic target) | IMiDs bind CRBN, redirecting the E3 ligase to degrade IKZF1/IKZF3, leading to myeloma cell death | ClinVar, COSMIC |
| 5q- myelodysplastic syndrome (therapeutic target) | Lenalidomide-induced degradation of casein kinase 1A1 (CSNK1A1) via CRBN selectively kills del(5q) clones | ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 24.5 | High |
| Brain (cerebellum) | 18.2 | High |
| Brain (cortex) | 15.8 | High |
| Heart | 12.1 | Medium |
| Liver | 9.3 | Medium |
| Kidney | 8.7 | Medium |
| Lung | 6.4 | Low |
| Pancreas | 5.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| K-562 (leukemia) | 14.2 | High expression |
| HeLa (cervical) | 12.8 | High expression |
| HEK 293 (embryonic kidney) | 11.5 | High expression |
| MCF7 (breast) | 9.1 | Medium expression |
| HepG2 (liver) | 7.6 | Medium expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1274C>T (p.R419X) | Nonsense | Rare | Loss of function; associated with intellectual disability |
| c.413C>T (p.R138X) | Nonsense | Rare | Loss of function; associated with intellectual disability |
| c.1A>G (p.M1V) | Missense | Rare | Loss of function; associated with intellectual disability |
| c.1085G>A (p.R362Q) | Missense | Rare | Loss of function; associated with intellectual disability |
Mutation functional classification
Loss of Function (LOF)
Nonsense and missense mutations (e.g., p.R419X, p.R138X, p.M1V) disrupt CRBN's ability to form a functional E3 ubiquitin ligase complex, leading to autosomal recessive intellectual disability.
Gain of Function (GOF)
Not described in germline; IMiD binding redirects CRBN to degrade neosubstrates (e.g., IKZF1, IKZF3), which is a pharmacologically induced gain-of-function.
Dominant Negative (DN)
Not reported for CRBN.
View complete mutation data:
Gene Ontology (GO)
| • GO:0004842 - ubiquitin-protein transferase activity | • GO:0006511 - ubiquitin-dependent protein catabolic process |
| • GO:0005634 - nucleus | • GO:0005829 - cytosol |
| • GO:0031625 - ubiquitin protein ligase binding | • GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process |
Pathways
• Ubiquitin mediated proteolysis (KEGG: hsa04120)
• CUL4A-DDB1-CRBN E3 ligase complex pathway
Protein Summary
Cereblon is a 442-amino acid protein that functions as a substrate receptor in the CUL4A-DDB1-RBX1 E3 ubiquitin ligase complex. It contains a Lon protease-like domain and a thalidomide-binding domain. Binding of immunomodulatory drugs (IMiDs) such as lenalidomide alters the substrate specificity of the complex, leading to ubiquitination and degradation of neosubstrates like IKZF1 and IKZF3. This mechanism underlies the therapeutic effects of IMiDs in multiple myeloma and del(5q) MDS. Loss-of-function mutations cause autosomal recessive intellectual disability (MRT2A).
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CRBN Knockout HEK293 Cell Line | EDC90033 | Human | 51185 | Details Get a Quote |
| CRBN Knockout A-549 Cell Line | EDJ-KQ18099 | Human | 51185 | Details Get a Quote |
| CRBN Knockout HCT 116 Cell Line | EDJ-KQ42256 | Human | 51185 | Details Get a Quote |
| CRBN Knockout HeLa Cell Line | EDC90160 | Human | 51185 | Details Get a Quote |
| CRBN Knockout T-47D Cell Line | EDC90484 | Human | 51185 | Details Get a Quote |
| CRBN Knockout 22Rv1 Cell Line | EDJ-KQ78070 | Human | 51185 | Details Get a Quote |
| CRBN Knockout MCF-7 Cell Line | EDJ-KQ78084 | Human | 51185 | Details Get a Quote |
| CRBN Knockout MOLT-4 Cell Line | EDJ-KQ78086 | Human | 51185 | Details Get a Quote |
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