CRBN Knockout HEK293 Cell Line

CRBN Knockout HEK293 Cell Line
Cat.No.:

EDC90033

Species:

Human

Cell Name:

HEK293

Gene:

CRBN

Gene ID:

51185

Size:

1×10⁶cells

CRBN Knockout Cell Line (HEK293) is an exclusive upgraded CRISPR/Cas9 system-mediated gene knockout cell, with the advantages of Optimized Strategy Design, Efficient Cell Transfection, High-Performance Cas9 Protein and Hassle-Free Cell Selection.
Cat.No. EDC90033
Product Name CRBN Knockout Cell Line (HEK 293)
Cell Line HEK293
Cellosaurus ID CVCL_0045
Cell Line Synonyms Hek293, HEK-293, HEK/293, (HEK)293, HEK 293, HEK,293, 293, 293 HEK, 293 Ad5, Graham 293, Graham-293, Human Embryonic Kidney 293
Gene CRBN
NCBI Gene ID
Gene Synonyms MRT2|MRT2A
Summary
This gene encodes a protein related to the Lon protease protein family. In rodents and other mammals this gene product is found in the cytoplasm localized with a calcium channel membrane protein, and is thought to play a role in brain development. Mutations in this gene are associated with autosomal recessive nonsyndromic cognitive disability. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2010]
Associated Diseases Non-tumor
Morphology Adherent
Passage Ratio 1/5,2days
Complete Culture Medium DMEM + 10% FBS
Freezing Medium 95% Complete culture medium+ 5% DMSO
QC Indels validated by Sanger sequencing; sterility confirmed via microbial testing.
* For research use only. Not intended for use in humans or animals, including clinical, therapeutic, or diagnostic purposes.
LociSTR Info (Sample Cell)
Sample Cell Line: HEK293
STR Info (Cell bank)
Cell Line: HEK293
Allele1Allele2Allele1Allele2
Amelogenin X X
CSF1P0 12 11 12
D2S1338 19 19
D3S1358 15 17 15 17
D5S818 8 8 9
D7S820 11 12 11 12
D8S1179 12 14 12 14
D13S317 12 14 12 14
D16S539 9 13 9 13
D18S51 17 18 17 18
D19S433 15 18 15 18
D21S11 28 30.2 28 30.2
FGA 23 23
Penta D 9 10 9 10
Penta E 7 15 7 15
TH01 7 9.3 7 9.3
TPOX 11 11
vWA 16 19 16 19
D6S1043 11 11
D12S391 19 21 11 15
D2S441 11 15 11 15
* STR authentication data of this cell line matches with that of cell lines sourced from ATCC, DSMZ, JCRB, and RIKEN databases.
Conclusion: The STR identification of this cell is correct.

FAQ

The choice depends on whether you are studying CRBN (cereblon) in a complementary high-transfection-efficiency biochemistry platform — CRBN is the substrate receptor of the CRL4^CRBN E3 ubiquitin ligase and the molecular target of thalidomide, lenalidomide, pomalidomide, and the entire IMiD class and CRBN-recruiting PROTAC field. The Knockout line is the standard tool for asking whether CRBN is required for IMiD/molecular glue/PROTAC degrader activity — CRBN was identified as the thalidomide target and is the foundational molecular glue degrader receptor. Overexpression is useful for studying CRBN in heterologous expression contexts. For systematic CRBN biochemistry, the EDITGENE CRBN Knockout in HEK293 is a workhorse mechanistic platform — HEK293 supports systematic structure-function studies and high-throughput rescue mutant screening. This product complements the parallel CRBN Knockout in HeLa (also available); HEK293 is preferred for biochemistry and structure-function studies, HeLa for imaging-based and chemotherapy resistance studies. Rescue with wild-type or thalidomide-binding-pocket mutants (Y355A, W380A, W386A, W400A) enables systematic IMiD/molecular glue/PROTAC specificity testing. The knockout is a critical specificity tool for the entire CRBN-targeting therapeutic field including thalidomide, lenalidomide (Revlimid), pomalidomide (Pomalyst), iberdomide, mezigdomide, GSPT1 degraders (CC-90009), and CRBN-recruiting PROTACs (ARV-110, ARV-471, KT-474, NX-2127, DT2216).
Primary applications: • IMiD specificity: critical genetic control for thalidomide, lenalidomide (Revlimid), pomalidomide (Pomalyst), iberdomide, mezigdomide — these IMiDs should have no degrader activity in CRBN-null cells. • Molecular glue degrader specificity: CC-90009 (GSPT1 degrader), CC-885, and emerging CRBN-recruiting molecular glues. • CRBN-recruiting PROTAC specificity: ARV-110 (AR), ARV-471 (ER), KT-474 (IRAK4), NX-2127 (BTK), DT2216 (BCL-XL) specificity testing. • Systematic mutation screening: HEK293's high transfection efficiency supports systematic Y355A, W380A, W386A, W400A mutant rescue analysis. EDITGENE recommends this HEK293-based model as the gold-standard biochemistry platform for the entire CRBN-targeted therapeutic field; the parallel CRBN Knockout in HeLa (also available) is preferred for imaging studies.
Yes, and rescue experiments are uniquely powerful for IMiD/molecular glue/PROTAC research: • Construct design: use a codon-modified CRBN sequence with a small C-terminal tag (FLAG, HA). CRBN has N-terminal Lon protease-like domain, helical-bundle domain, and C-terminal thalidomide-binding domain (TBD) with the critical tri-tryptophan/Y pocket — preserve all elements. • Thalidomide-binding-pocket mutant rescue: ⭐⭐ Y355A, W380A, W386A, W400A mutations abolish IMiD binding — gold-standard specificity control for the entire CRBN-targeted therapeutic field. • IMiD resistance mutation rescue: clinical IMiD-resistant patient CRBN mutations enable resistance mechanism studies. • DDB1-binding-deficient rescue: N-terminal CRBN mutations disrupt CRL4 complex assembly. • Functional readout: rescue should restore IKZF1, IKZF3, CK1α, GSPT1 degradation upon IMiD/molecular glue treatment; thalidomide-binding-pocket mutants should be insensitive to all CRBN-recruiting compounds. HEK293 transduces efficiently with lentivirus and supports stable rescue line generation for systematic CRBN mutant screening.
* Research Use Disclaimer: Content is generated from publicly available research data, bioinformatic resources, and computational analyses for research reference only.

Related Publications

IF=16.6
Molecular cell
The complex architecture of transmembrane proteins requires quality control (QC) of folding, membrane positioning, and trafficking as prerequisites for cellular homeostasis and intercellular communication. However, it has remained unclear whether transmembrane protein-specific QC hubs exist. Here we identify cereblon (CRBN), the target of immunomodulatory drugs (IMiDs), as a co-chaperone that specifically determines chaperone activity of HSP90 toward transmembrane proteins by means of counteracting AHA1. This function is abrogated by IMiDs, which disrupt the interaction of CRBN with HSP90. Among the multiple transmembrane protein clients of CRBN-AHA1-HSP90 revealed by cell surface proteomics, we identify the amino acid transporter LAT1/CD98hc as a determinant of IMiD activity in multiple myeloma (MM) and present an Anticalin-based CD98hc radiopharmaceutical for MM radio-theranostics. These data establish the CRBN-AHA1-HSP90 axis in the biogenesis of transmembrane proteins, link IMiD activity to tumor metabolism, and nominate CD98hc and LAT1 as attractive diagnostic and therapeutic targets in MM.
IF=15.7
Nature communications
Cereblon (CRBN) is an E3 ubiquitin ligase widely harnessed for targeted protein degradation (TPD). We report the discovery of a molecular glue degrader (MGD), MRT-31619, that drives homo-dimerization of CRBN and promotes its fast, potent, and selective degradation by the ubiquitin proteasome system. Interestingly, the cryo-electron microscopy (cryo-EM) structure of the CRBN homodimer reveals a unique mechanism whereby two molecular glues assemble into a helix-like structure and drive ternary complex formation by mimicking a neosubstrate G-loop degron. This CRBN chemical knockout offers a valuable tool to elucidate the molecular mechanism of MGDs, to investigate its endogenous substrates and understand their physiological roles.
IF=13.7
Nature chemical biology
The E3 ligase substrate adapter cereblon (CRBN), the primary target of clinical agents thalidomide and lenalidomide, recognizes endogenous substrates bearing the C-terminal cyclic imide modification. Although C-terminal cyclic imides can form spontaneously, an enzyme that regulates their formation and thereby promotes a biological pathway connecting substrates to CRBN is unknown. Here we report that protein carboxymethyltransferase (PCMT1) promotes formation of C-terminal cyclic imides on C-terminal asparagine residues of CRBN substrates. PCMT1 and CRBN coregulate the levels of metabolic enzymes including glutamine synthetase and inorganic pyrophosphatase 1 in vitro, in cells and in vivo, and this regulation is associated with the proepileptic phenotype of CRBN knockout mouse models. The discovery of an enzyme that regulates CRBN substrates through the C-terminal cyclic imide reveals a previously unknown biological pathway that is perturbed by thalidomide derivatives and provides a biochemical basis for the connection between multiple biological processes and CRBN.
This KO model may be useful for: - Investigating CRBN homo-dimerization and degradation mechanisms induced by molecular glues - Studying degron recognition and substrate modification pathways, such as PCMT1-mediated cyclic imide formation - Evaluating the role of CRBN in modulating HSP90 activity and its impact on transmembrane protein stability - Screening and characterizing novel IMiD-based therapies targeting multiple myeloma - Exploring CRBN-dependent protein homeostasis and its implications in targeted protein degradation research

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