CLEC6A
C-type lectin domain family 6 member A
Gene Information Card
| Symbol | CLEC6A |
|---|---|
| Full Name | C-type lectin domain family 6 member A |
| Gene Type | protein-coding |
| Chromosomal Location | 12p13.31 |
| NCBI Gene ID | 93978 ncbi.nlm.nih.gov/gene/93978 |
| Ensembl ID | ENSG00000157873 |
| UniProt ID | Q6EIG7 |
| OMIM ID | 613792 |
| HGNC ID | 14556 |
| Aliases | CLEC4N, Dectin-2, DECTIN2 |
Description
CLEC6A encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. The encoded protein is a type II transmembrane receptor expressed primarily on dendritic cells and macrophages. It functions as a pattern recognition receptor (PRR) that recognizes carbohydrate structures on pathogens, particularly fungal cell wall components such as mannan. Ligand binding triggers intracellular signaling via the ITAM-containing adaptor Fc receptor gamma-chain (FCER1G), leading to activation of NF-κB and production of pro-inflammatory cytokines. CLEC6A plays a critical role in antifungal immunity and has been implicated in inflammatory and autoimmune conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Candidiasis, chronic mucocutaneous | Loss-of-function variants impair fungal recognition and immune response | ClinVar, OMIM |
| Rheumatoid arthritis | Polymorphisms associated with altered inflammatory cytokine production | NCBI Gene, PubMed |
| Asthma | CLEC6A-mediated recognition of fungal allergens may contribute to airway inflammation | NCBI Gene, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lung | 12.5 | Medium |
| Spleen | 10.8 | Medium |
| Bone marrow | 8.3 | Low |
| Lymph node | 7.1 | Low |
| Whole blood | 5.2 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Monocytes | 15.3 | High expression in CD14+ monocytes |
| Dendritic cells (myeloid) | 22.1 | Highest expression among immune cells |
| Macrophages | 18.7 | Strong expression |
| B lymphocytes | 2.1 | Low expression |
| NK cells | 1.5 | Very low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.52C>T (p.Arg18Trp) | Missense | 0.01% (gnomAD) | Unknown functional effect; rare population variant |
| c.148G>A (p.Val50Met) | Missense | 0.005% (gnomAD) | Potential loss of ligand binding; not clinically validated |
| c.421A>G (p.Ile141Val) | Missense | 0.02% (gnomAD) | Benign; no known disease association |
Mutation functional classification
Loss of Function (LOF)
Rare missense variants in the C-type lectin domain may impair carbohydrate recognition and signaling, leading to reduced cytokine production and increased susceptibility to fungal infections.
Gain of Function (GOF)
No gain-of-function mutations have been reported for CLEC6A.
Dominant Negative (DN)
No dominant-negative mutations have been described for CLEC6A.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Fc epsilon receptor (FCERI) signaling
• NF-kappa B signaling
• Toll-like receptor signaling (crosstalk)
• Dectin-2 mediated antifungal immunity
Protein Summary
CLEC6A (Dectin-2) is a 209-amino acid type II transmembrane C-type lectin receptor. It contains a single extracellular C-type lectin-like domain (CTLD) that recognizes high-mannose structures on fungal cell walls. The short cytoplasmic tail lacks a signaling motif; instead, CLEC6A associates with the ITAM-containing adaptor Fc receptor gamma-chain (FCER1G) via a charged residue in its transmembrane domain. Upon ligand binding, Src family kinases phosphorylate the ITAM, recruiting Syk kinase and activating downstream pathways including NF-κB and MAPK. This leads to production of TNF-α, IL-6, IL-10, and IL-23, promoting Th17 responses essential for antifungal defense. CLEC6A is also involved in the recognition of self-glycoproteins and has been linked to autoimmune and inflammatory diseases.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CLEC6A Knockout HEK293 Cell Line | EDJ-KQ11266 | Human | 93978 | Details Get a Quote |
| CLEC6A Knockout HeLa Cell Line | EDJ-KQ57872 | Human | 93978 | Details Get a Quote |
| CLEC6A Knockout A-549 Cell Line | EDJ-KQ66367 | Human | 93978 | Details Get a Quote |
| CLEC6A Knockout HCT 116 Cell Line | EDJ-KQ74791 | Human | 93978 | Details Get a Quote |