CLEC6A

C-type lectin domain family 6 member A

Gene Information Card

Symbol CLEC6A
Full Name C-type lectin domain family 6 member A
Gene Type protein-coding
Chromosomal Location 12p13.31
NCBI Gene ID 93978 ncbi.nlm.nih.gov/gene/93978
Ensembl ID ENSG00000157873
UniProt ID Q6EIG7
OMIM ID 613792
HGNC ID 14556
Aliases CLEC4N, Dectin-2, DECTIN2

Description

CLEC6A encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. The encoded protein is a type II transmembrane receptor expressed primarily on dendritic cells and macrophages. It functions as a pattern recognition receptor (PRR) that recognizes carbohydrate structures on pathogens, particularly fungal cell wall components such as mannan. Ligand binding triggers intracellular signaling via the ITAM-containing adaptor Fc receptor gamma-chain (FCER1G), leading to activation of NF-κB and production of pro-inflammatory cytokines. CLEC6A plays a critical role in antifungal immunity and has been implicated in inflammatory and autoimmune conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Candidiasis, chronic mucocutaneous Loss-of-function variants impair fungal recognition and immune response ClinVar, OMIM
Rheumatoid arthritis Polymorphisms associated with altered inflammatory cytokine production NCBI Gene, PubMed
Asthma CLEC6A-mediated recognition of fungal allergens may contribute to airway inflammation NCBI Gene, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Lung 12.5 Medium
Spleen 10.8 Medium
Bone marrow 8.3 Low
Lymph node 7.1 Low
Whole blood 5.2 Low
Cell Line Expression
Cell Line nTPM Notes
Monocytes 15.3 High expression in CD14+ monocytes
Dendritic cells (myeloid) 22.1 Highest expression among immune cells
Macrophages 18.7 Strong expression
B lymphocytes 2.1 Low expression
NK cells 1.5 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.52C>T (p.Arg18Trp) Missense 0.01% (gnomAD) Unknown functional effect; rare population variant
c.148G>A (p.Val50Met) Missense 0.005% (gnomAD) Potential loss of ligand binding; not clinically validated
c.421A>G (p.Ile141Val) Missense 0.02% (gnomAD) Benign; no known disease association
Mutation functional classification

Loss of Function (LOF)

Rare missense variants in the C-type lectin domain may impair carbohydrate recognition and signaling, leading to reduced cytokine production and increased susceptibility to fungal infections.

Gain of Function (GOF)

No gain-of-function mutations have been reported for CLEC6A.

Dominant Negative (DN)

No dominant-negative mutations have been described for CLEC6A.

Pathways

• Fc epsilon receptor (FCERI) signaling
• NF-kappa B signaling
• Toll-like receptor signaling (crosstalk)
• Dectin-2 mediated antifungal immunity

Protein Summary

CLEC6A (Dectin-2) is a 209-amino acid type II transmembrane C-type lectin receptor. It contains a single extracellular C-type lectin-like domain (CTLD) that recognizes high-mannose structures on fungal cell walls. The short cytoplasmic tail lacks a signaling motif; instead, CLEC6A associates with the ITAM-containing adaptor Fc receptor gamma-chain (FCER1G) via a charged residue in its transmembrane domain. Upon ligand binding, Src family kinases phosphorylate the ITAM, recruiting Syk kinase and activating downstream pathways including NF-κB and MAPK. This leads to production of TNF-α, IL-6, IL-10, and IL-23, promoting Th17 responses essential for antifungal defense. CLEC6A is also involved in the recognition of self-glycoproteins and has been linked to autoimmune and inflammatory diseases.

Related Products

Product name Cat.No. Species Gene ID
CLEC6A Knockout HEK293 Cell Line EDJ-KQ11266 Human 93978 Details Get a Quote
CLEC6A Knockout HeLa Cell Line EDJ-KQ57872 Human 93978 Details Get a Quote
CLEC6A Knockout A-549 Cell Line EDJ-KQ66367 Human 93978 Details Get a Quote
CLEC6A Knockout HCT 116 Cell Line EDJ-KQ74791 Human 93978 Details Get a Quote
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