CHRNA2: Cholinergic Receptor Nicotinic Alpha 2 Subunit

A key neuronal nicotinic acetylcholine receptor subunit involved in epilepsy and neuropsychiatric disorders

Gene Information Card

Symbol CHRNA2
Full Name Cholinergic Receptor Nicotinic Alpha 2 Subunit
Gene Type protein-coding
Chromosomal Location 8p21.2
NCBI Gene ID 1139 ncbi.nlm.nih.gov/gene/1139
Ensembl ID ENSG00000120903
UniProt ID Q15822
OMIM ID 118502
HGNC ID 1956
Aliases NACHRA2, CHRNA2, nAChRalpha2

Description

CHRNA2 encodes the alpha-2 subunit of neuronal nicotinic acetylcholine receptors (nAChRs). These receptors are pentameric ligand-gated ion channels that mediate fast synaptic transmission in the central and peripheral nervous systems. The alpha-2 subunit combines with beta subunits to form functional receptors that respond to acetylcholine and nicotine. CHRNA2 is primarily expressed in the brain, particularly in the cerebral cortex, hippocampus, and thalamus. Mutations in CHRNA2 are associated with autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE) and other neuropsychiatric conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE) Missense mutations (e.g., p.Ile279Asn, p.Val287Leu) alter channel gating and calcium permeability, leading to hyperexcitability ClinVar, OMIM
Epilepsy, nocturnal frontal lobe, type 4 (ENFL4) Same mechanism as ADNFLE; specific mutations in CHRNA2 cause this subtype OMIM
Nicotine dependence Polymorphisms in CHRNA2 may modulate receptor function and influence smoking behavior NCBI Gene, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Cerebral cortex 12.5 Medium
Hippocampus 10.8 Medium
Thalamus 9.2 Medium
Cerebellum 6.4 Low
Spinal cord 4.1 Low
Heart 0.3 Not detected
Liver 0.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 8.7 Neuronal model; expresses endogenous CHRNA2
SK-N-BE(2) (neuroblastoma) 6.2 Lower expression compared to SH-SY5Y
HEK293 (embryonic kidney) 0.5 Negligible; used for heterologous expression studies
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.836T>A (p.Ile279Asn) Missense Rare Alters channel conductance; associated with ADNFLE
c.859G>C (p.Val287Leu) Missense Rare Increases receptor sensitivity; associated with ADNFLE
c.1013C>T (p.Thr338Met) Missense Rare Reduces calcium permeability; reported in epilepsy patients
Mutation functional classification

Loss of Function (LOF)

p.Thr338Met reduces calcium influx and channel activity.

Gain of Function (GOF)

p.Val287Leu increases receptor sensitivity to acetylcholine.

Dominant Negative (DN)

p.Ile279Asn alters channel gating and may impair assembly of functional pentamers.

Pathways

• Nicotinic acetylcholine receptor signaling pathway (Reactome: R-HSA-629587)
• Neurotransmitter receptor binding and downstream transmission in the postsynaptic cell (Reactome: R-HSA-112314)
• Acetylcholine binding and channel opening (Reactome: R-HSA-629594)

Protein Summary

The CHRNA2 protein (UniProt Q15822) is a 529-amino acid integral membrane protein with four transmembrane domains (M1-M4). It contains a large extracellular N-terminal domain that binds acetylcholine and nicotine, and a cytoplasmic loop between M3 and M4 that modulates receptor trafficking and function. The alpha-2 subunit assembles with beta subunits (e.g., beta-2, beta-4) to form functional heteropentameric channels. These channels are permeable to Na+, K+, and Ca2+ ions and mediate fast excitatory neurotransmission. Mutations in CHRNA2 alter channel properties and are linked to epilepsy.

Related Products

Product name Cat.No. Species Gene ID
CHRNA2 Knockout HEK293 Cell Line EDJ-KQ3440 Human 1135 Details Get a Quote
CHRNA2 Knockout HeLa Cell Line EDJ-KQ52901 Human 1135 Details Get a Quote
CHRNA2 Knockout A-549 Cell Line EDJ-KQ61370 Human 1135 Details Get a Quote
CHRNA2 Knockout HCT 116 Cell Line EDJ-KQ69866 Human 1135 Details Get a Quote
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