CHRNA2: Cholinergic Receptor Nicotinic Alpha 2 Subunit
A key neuronal nicotinic acetylcholine receptor subunit involved in epilepsy and neuropsychiatric disorders
Gene Information Card
| Symbol | CHRNA2 |
|---|---|
| Full Name | Cholinergic Receptor Nicotinic Alpha 2 Subunit |
| Gene Type | protein-coding |
| Chromosomal Location | 8p21.2 |
| NCBI Gene ID | 1139 ncbi.nlm.nih.gov/gene/1139 |
| Ensembl ID | ENSG00000120903 |
| UniProt ID | Q15822 |
| OMIM ID | 118502 |
| HGNC ID | 1956 |
| Aliases | NACHRA2, CHRNA2, nAChRalpha2 |
Description
CHRNA2 encodes the alpha-2 subunit of neuronal nicotinic acetylcholine receptors (nAChRs). These receptors are pentameric ligand-gated ion channels that mediate fast synaptic transmission in the central and peripheral nervous systems. The alpha-2 subunit combines with beta subunits to form functional receptors that respond to acetylcholine and nicotine. CHRNA2 is primarily expressed in the brain, particularly in the cerebral cortex, hippocampus, and thalamus. Mutations in CHRNA2 are associated with autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE) and other neuropsychiatric conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE) | Missense mutations (e.g., p.Ile279Asn, p.Val287Leu) alter channel gating and calcium permeability, leading to hyperexcitability | ClinVar, OMIM |
| Epilepsy, nocturnal frontal lobe, type 4 (ENFL4) | Same mechanism as ADNFLE; specific mutations in CHRNA2 cause this subtype | OMIM |
| Nicotine dependence | Polymorphisms in CHRNA2 may modulate receptor function and influence smoking behavior | NCBI Gene, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Cerebral cortex | 12.5 | Medium |
| Hippocampus | 10.8 | Medium |
| Thalamus | 9.2 | Medium |
| Cerebellum | 6.4 | Low |
| Spinal cord | 4.1 | Low |
| Heart | 0.3 | Not detected |
| Liver | 0.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 8.7 | Neuronal model; expresses endogenous CHRNA2 |
| SK-N-BE(2) (neuroblastoma) | 6.2 | Lower expression compared to SH-SY5Y |
| HEK293 (embryonic kidney) | 0.5 | Negligible; used for heterologous expression studies |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.836T>A (p.Ile279Asn) | Missense | Rare | Alters channel conductance; associated with ADNFLE |
| c.859G>C (p.Val287Leu) | Missense | Rare | Increases receptor sensitivity; associated with ADNFLE |
| c.1013C>T (p.Thr338Met) | Missense | Rare | Reduces calcium permeability; reported in epilepsy patients |
Mutation functional classification
Loss of Function (LOF)
p.Thr338Met reduces calcium influx and channel activity.
Gain of Function (GOF)
p.Val287Leu increases receptor sensitivity to acetylcholine.
Dominant Negative (DN)
p.Ile279Asn alters channel gating and may impair assembly of functional pentamers.
View complete mutation data:
Gene Ontology (GO)
| • transmembrane signaling receptor activity (GO:0004888) | • extracellular ligand-gated ion channel activity (GO:0005230) |
| • nicotinic acetylcholine-gated receptor complex (GO:0005892) | • ion transport (GO:0006811) |
| • chemical synaptic transmission (GO:0007268) | • membrane (GO:0016020) |
| • response to nicotine (GO:0035094) | • postsynaptic membrane (GO:0045211) |
Pathways
• Nicotinic acetylcholine receptor signaling pathway (Reactome: R-HSA-629587)
• Neurotransmitter receptor binding and downstream transmission in the postsynaptic cell (Reactome: R-HSA-112314)
• Acetylcholine binding and channel opening (Reactome: R-HSA-629594)
Protein Summary
The CHRNA2 protein (UniProt Q15822) is a 529-amino acid integral membrane protein with four transmembrane domains (M1-M4). It contains a large extracellular N-terminal domain that binds acetylcholine and nicotine, and a cytoplasmic loop between M3 and M4 that modulates receptor trafficking and function. The alpha-2 subunit assembles with beta subunits (e.g., beta-2, beta-4) to form functional heteropentameric channels. These channels are permeable to Na+, K+, and Ca2+ ions and mediate fast excitatory neurotransmission. Mutations in CHRNA2 alter channel properties and are linked to epilepsy.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CHRNA2 Knockout HEK293 Cell Line | EDJ-KQ3440 | Human | 1135 | Details Get a Quote |
| CHRNA2 Knockout HeLa Cell Line | EDJ-KQ52901 | Human | 1135 | Details Get a Quote |
| CHRNA2 Knockout A-549 Cell Line | EDJ-KQ61370 | Human | 1135 | Details Get a Quote |
| CHRNA2 Knockout HCT 116 Cell Line | EDJ-KQ69866 | Human | 1135 | Details Get a Quote |