AKAP9: A-Kinase Anchoring Protein 9

Key regulator of protein kinase A signaling and cardiac electrophysiology

Gene Information Card

Symbol AKAP9
Full Name A-kinase anchoring protein 9
Gene Type Protein coding
Chromosomal Location 7q21.2
NCBI Gene ID 10142 ncbi.nlm.nih.gov/gene/10142
Ensembl ID ENSG00000127914
UniProt ID Q99996
OMIM ID 604001
HGNC ID 379
Aliases AKAP350, AKAP450, CG-NAP, PRKA9, YT16

Description

AKAP9 (A-kinase anchoring protein 9) encodes a scaffold protein that anchors protein kinase A (PKA) and other signaling enzymes to specific subcellular compartments, including the centrosome and Golgi apparatus. It plays a critical role in regulating cardiac ion channels, particularly the potassium channel KCNQ1, and is essential for normal cardiac repolarization. Mutations in AKAP9 are associated with long QT syndrome and other arrhythmias. The protein also participates in microtubule organization and cell cycle progression.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Long QT syndrome 11 Loss-of-function mutations disrupt PKA anchoring to KCNQ1, impairing cardiac repolarization OMIM #611820; ClinVar
Breast cancer Somatic mutations and overexpression may alter centrosome function and cell cycle regulation COSMIC; NCBI PubMed
Colorectal cancer AKAP9 amplification or rearrangement reported in some cases COSMIC
Cardiac arrhythmia Disruption of AKAP9-mediated signaling leads to abnormal ion channel regulation ClinVar; OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Heart 12.5 Medium
Brain 8.3 Low
Lung 6.1 Low
Liver 4.2 Low
Kidney 7.8 Low
Testis 15.2 Medium
Cell Line Expression
Cell Line nTPM Notes
HEK293 10.1 High expression in kidney-derived line
HeLa 8.5 Moderate expression
MCF7 7.2 Breast cancer line
H9c2 12.3 Rat cardiac myoblast line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.473C>T (p.Ser158Leu) Missense Rare Reduced PKA binding; associated with LQTS
c.1003G>A (p.Gly335Arg) Missense Rare Impaired KCNQ1 regulation; LQTS
c.1441delC (p.Leu481fs) Frameshift Very rare Loss of function; LQTS
c.5074C>T (p.Arg1692Trp) Missense 0.01% Uncertain significance; ClinVar
Mutation functional classification

Loss of Function (LOF)

Missense and frameshift mutations that reduce PKA anchoring or disrupt protein stability, leading to impaired cardiac repolarization and long QT syndrome.

Gain of Function (GOF)

Not well characterized; some somatic mutations in cancer may enhance centrosome signaling.

Dominant Negative (DN)

Certain missense mutations may interfere with wild-type AKAP9 function in heterozygous state, contributing to arrhythmia.

Gene Ontology (GO)

• GO:0005515 - protein binding • GO:0005737 - cytoplasm
• GO:0005813 - centrosome • GO:0005794 - Golgi apparatus
• GO:0005881 - cytoplasmic microtubule • GO:0034236 - protein kinase A anchoring
• GO:0051015 - actin filament binding • GO:0086091 - regulation of heart rate by cardiac conduction

Pathways

Adrenergic signaling in cardiomyocytes (KEGG: hsa04261)
cGMP-PKG signaling pathway (KEGG: hsa04022)
PKA-mediated phosphorylation of KCNQ1 (Reactome: R-HSA-5576892)
Centrosome maturation (Reactome: R-HSA-380270)

Protein Summary

AKAP9 is a large scaffold protein (approximately 390 kDa) that localizes to centrosomes, Golgi, and plasma membrane. It contains multiple PKA-binding domains, a targeting domain for centrosomal localization, and interacts with ion channels such as KCNQ1. Through its anchoring function, AKAP9 coordinates PKA phosphorylation of substrates involved in cell cycle, microtubule dynamics, and cardiac action potential. The protein also binds other kinases (PKC, PKN) and phosphatases, integrating diverse signaling inputs.

Related Products

Product name Cat.No. Species Gene ID
AKAP9 Knockout HEK293 Cell Line EDJ-KQ6912 Human 10142 Details Get a Quote
AKAP9 Knockout HeLa Cell Line EDJ-KQ30171 Human 10142 Details Get a Quote
AKAP9 Knockout A-549 Cell Line EDJ-KQ31544 Human 10142 Details Get a Quote
AKAP9 Knockout HCT 116 Cell Line EDJ-KQ31545 Human 10142 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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