ABCB9: ATP Binding Cassette Subfamily B Member 9
A lysosomal/endosomal transporter implicated in antigen processing and potential roles in cancer and neurodegenerative disorders.
Gene Information Card
| Symbol | ABCB9 |
|---|---|
| Full Name | ATP binding cassette subfamily B member 9 |
| Gene Type | protein-coding |
| Chromosomal Location | 12q24.31 |
| NCBI Gene ID | 23457 ncbi.nlm.nih.gov/gene/23457 |
| Ensembl ID | ENSG00000150907 |
| UniProt ID | Q9NP78 |
| OMIM ID | 605193 |
| HGNC ID | 48 |
| Aliases | TAPL, ABC-TAP, EST422562 |
Description
ABCB9 encodes a member of the ATP-binding cassette (ABC) transporter superfamily. The protein, also known as TAP-like (TAPL), is localized to lysosomal and endosomal membranes and functions as a peptide transporter. It is involved in the translocation of peptides from the cytosol into lysosomes, potentially contributing to antigen processing and presentation via MHC class I-like molecules. ABCB9 is expressed in various tissues, with highest levels in testis, brain, and immune cells. Alterations in ABCB9 expression or function have been linked to cancer progression and neurodegenerative conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (various types) | Dysregulation of ABCB9 expression may alter lysosomal peptide transport, affecting immune surveillance and tumor growth. | COSMIC; literature (PMID: 25691885) |
| Neurodegenerative disorders (e.g., Alzheimer's disease) | Impaired lysosomal peptide clearance due to ABCB9 dysfunction may contribute to protein aggregation. | ClinVar; literature (PMID: 29056246) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 12.5 | High |
| Brain | 8.3 | Medium |
| Lung | 5.1 | Low |
| Liver | 3.2 | Low |
| Kidney | 4.7 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK293 | 6.8 | Embryonic kidney cells |
| HeLa | 4.2 | Cervical cancer cells |
| SH-SY5Y | 9.1 | Neuroblastoma cells |
| THP-1 | 7.5 | Monocytic leukemia cells |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234C>T (p.Arg412Cys) | Missense | 0.01% (gnomAD) | Potential loss of transport function |
| c.567_568insA (p.Glu190Argfs*12) | Frameshift | Rare | Loss of function |
Mutation functional classification
Loss of Function (LOF)
Frameshift and nonsense mutations in ABCB9 are predicted to cause loss of peptide transport activity, impairing lysosomal antigen processing.
Gain of Function (GOF)
No gain-of-function mutations have been reported for ABCB9.
Dominant Negative (DN)
No dominant-negative mutations have been characterized for ABCB9.
View complete mutation data:
Gene Ontology (GO)
| • GO:0005524 - ATP binding | • GO:0015432 - ABC-type peptide transporter activity |
| • GO:0016021 - integral component of membrane | • GO:0005764 - lysosome |
| • GO:0019886 - antigen processing and presentation of exogenous peptide antigen via MHC class II |
Pathways
• Antigen processing and presentation (Reactome: R-HSA-1236974)
• ABC transporter family (KEGG: hsa02010)
Protein Summary
ABCB9 (TAPL) is a 766-amino acid ABC transporter with two transmembrane domains and two nucleotide-binding domains. It forms a homodimer that translocates peptides from the cytosol into lysosomes in an ATP-dependent manner. The protein is essential for lysosomal peptide loading onto MHC class I-like molecules (e.g., CD1d) and may influence immune responses. Structural studies reveal a conserved ABC transporter fold with a peptide-binding pocket.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ABCB9 Knockout HEK293 Cell Line | EDJ-KQ7343 | Human | 23457 | Details Get a Quote |
| ABCB9 Knockout A-549 Cell Line | EDJ-KQ33781 | Human | 23457 | Details Get a Quote |
| ABCB9 Knockout HCT 116 Cell Line | EDJ-KQ33783 | Human | 23457 | Details Get a Quote |
| ABCB9 Knockout HeLa Cell Line | EDJ-KQ33784 | Human | 23457 | Details Get a Quote |
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