ABCB9: ATP Binding Cassette Subfamily B Member 9

A lysosomal/endosomal transporter implicated in antigen processing and potential roles in cancer and neurodegenerative disorders.

Gene Information Card

Symbol ABCB9
Full Name ATP binding cassette subfamily B member 9
Gene Type protein-coding
Chromosomal Location 12q24.31
NCBI Gene ID 23457 ncbi.nlm.nih.gov/gene/23457
Ensembl ID ENSG00000150907
UniProt ID Q9NP78
OMIM ID 605193
HGNC ID 48
Aliases TAPL, ABC-TAP, EST422562

Description

ABCB9 encodes a member of the ATP-binding cassette (ABC) transporter superfamily. The protein, also known as TAP-like (TAPL), is localized to lysosomal and endosomal membranes and functions as a peptide transporter. It is involved in the translocation of peptides from the cytosol into lysosomes, potentially contributing to antigen processing and presentation via MHC class I-like molecules. ABCB9 is expressed in various tissues, with highest levels in testis, brain, and immune cells. Alterations in ABCB9 expression or function have been linked to cancer progression and neurodegenerative conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) Dysregulation of ABCB9 expression may alter lysosomal peptide transport, affecting immune surveillance and tumor growth. COSMIC; literature (PMID: 25691885)
Neurodegenerative disorders (e.g., Alzheimer's disease) Impaired lysosomal peptide clearance due to ABCB9 dysfunction may contribute to protein aggregation. ClinVar; literature (PMID: 29056246)

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 12.5 High
Brain 8.3 Medium
Lung 5.1 Low
Liver 3.2 Low
Kidney 4.7 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 6.8 Embryonic kidney cells
HeLa 4.2 Cervical cancer cells
SH-SY5Y 9.1 Neuroblastoma cells
THP-1 7.5 Monocytic leukemia cells
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1234C>T (p.Arg412Cys) Missense 0.01% (gnomAD) Potential loss of transport function
c.567_568insA (p.Glu190Argfs*12) Frameshift Rare Loss of function
Mutation functional classification

Loss of Function (LOF)

Frameshift and nonsense mutations in ABCB9 are predicted to cause loss of peptide transport activity, impairing lysosomal antigen processing.

Gain of Function (GOF)

No gain-of-function mutations have been reported for ABCB9.

Dominant Negative (DN)

No dominant-negative mutations have been characterized for ABCB9.

Gene Ontology (GO)

• GO:0005524 - ATP binding • GO:0015432 - ABC-type peptide transporter activity
• GO:0016021 - integral component of membrane • GO:0005764 - lysosome
• GO:0019886 - antigen processing and presentation of exogenous peptide antigen via MHC class II

Pathways

Antigen processing and presentation (Reactome: R-HSA-1236974)
ABC transporter family (KEGG: hsa02010)

Protein Summary

ABCB9 (TAPL) is a 766-amino acid ABC transporter with two transmembrane domains and two nucleotide-binding domains. It forms a homodimer that translocates peptides from the cytosol into lysosomes in an ATP-dependent manner. The protein is essential for lysosomal peptide loading onto MHC class I-like molecules (e.g., CD1d) and may influence immune responses. Structural studies reveal a conserved ABC transporter fold with a peptide-binding pocket.

Related Products

Product name Cat.No. Species Gene ID
ABCB9 Knockout HEK293 Cell Line EDJ-KQ7343 Human 23457 Details Get a Quote
ABCB9 Knockout A-549 Cell Line EDJ-KQ33781 Human 23457 Details Get a Quote
ABCB9 Knockout HCT 116 Cell Line EDJ-KQ33783 Human 23457 Details Get a Quote
ABCB9 Knockout HeLa Cell Line EDJ-KQ33784 Human 23457 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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