ZNF790: Zinc Finger Protein 790

A KRAB-Zinc Finger Transcription Factor with Potential Roles in Gene Regulation and Disease

Gene Information Card

Symbol ZNF790
Full Name zinc finger protein 790
Gene Type protein-coding
Chromosomal Location 19q13.43
NCBI Gene ID 388591 ncbi.nlm.nih.gov/gene/388591
Ensembl ID ENSG00000197121
UniProt ID Q8N9N2
OMIM ID 618425
HGNC ID 25253
Aliases FLJ32709, MGC35130

Description

ZNF790 encodes a zinc finger protein of the Krüppel-associated box (KRAB) family, characterized by an N-terminal KRAB domain and multiple C2H2-type zinc finger motifs. As a transcription factor, it likely represses gene expression via recruitment of chromatin-modifying complexes. The gene is located on chromosome 19q13.43, a region associated with various genomic disorders. Expression data suggest broad tissue distribution with highest levels in testis and brain. Limited functional studies indicate potential roles in development and cellular differentiation.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
No specific disease association established Not applicable No curated evidence in ClinVar or OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 12.5 Medium
Brain (cerebellum) 8.2 Low
Lung 5.1 Low
Liver 3.8 Low
Kidney 4.0 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 6.3 RNA-seq data from ENCODE
K562 4.8 RNA-seq data from ENCODE
HepG2 3.9 RNA-seq data from ENCODE
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
No reported pathogenic variants Not applicable Not applicable Not applicable
Mutation functional classification

Loss of Function (LOF)

No data available

Gain of Function (GOF)

No data available

Dominant Negative (DN)

No data available

Pathways

No curated pathways in Reactome or KEGG

Protein Summary

ZNF790 is a 598-amino acid protein containing a KRAB domain (residues 1–75) and 12 C2H2-type zinc finger domains (residues 100–580). The KRAB domain mediates transcriptional repression through interaction with KAP1/TRIM28, recruiting histone deacetylases and methyltransferases. The zinc fingers are predicted to bind specific DNA sequences, though target genes remain unidentified. Structural modeling suggests a compact conformation with zinc fingers arranged in a helical array. Post-translational modifications include phosphorylation sites (Ser/Thr) and potential ubiquitination, but experimental validation is lacking.

Related Products

Product name Cat.No. Species Gene ID
ZNF790 Knockout HEK293 Cell Line EDJ-KQ16373 Human 388536 Details Get a Quote
ZNF790 Knockout HeLa Cell Line EDJ-KQ60030 Human 388536 Details Get a Quote
ZNF790 Knockout A-549 Cell Line EDJ-KQ68491 Human 388536 Details Get a Quote
ZNF790 Knockout HCT 116 Cell Line EDJ-KQ76869 Human 388536 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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