ZNF790: Zinc Finger Protein 790
A KRAB-Zinc Finger Transcription Factor with Potential Roles in Gene Regulation and Disease
Gene Information Card
| Symbol | ZNF790 |
|---|---|
| Full Name | zinc finger protein 790 |
| Gene Type | protein-coding |
| Chromosomal Location | 19q13.43 |
| NCBI Gene ID | 388591 ncbi.nlm.nih.gov/gene/388591 |
| Ensembl ID | ENSG00000197121 |
| UniProt ID | Q8N9N2 |
| OMIM ID | 618425 |
| HGNC ID | 25253 |
| Aliases | FLJ32709, MGC35130 |
Description
ZNF790 encodes a zinc finger protein of the Krüppel-associated box (KRAB) family, characterized by an N-terminal KRAB domain and multiple C2H2-type zinc finger motifs. As a transcription factor, it likely represses gene expression via recruitment of chromatin-modifying complexes. The gene is located on chromosome 19q13.43, a region associated with various genomic disorders. Expression data suggest broad tissue distribution with highest levels in testis and brain. Limited functional studies indicate potential roles in development and cellular differentiation.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| No specific disease association established | Not applicable | No curated evidence in ClinVar or OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 12.5 | Medium |
| Brain (cerebellum) | 8.2 | Low |
| Lung | 5.1 | Low |
| Liver | 3.8 | Low |
| Kidney | 4.0 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK293 | 6.3 | RNA-seq data from ENCODE |
| K562 | 4.8 | RNA-seq data from ENCODE |
| HepG2 | 3.9 | RNA-seq data from ENCODE |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| No reported pathogenic variants | Not applicable | Not applicable | Not applicable |
Mutation functional classification
Loss of Function (LOF)
No data available
Gain of Function (GOF)
No data available
Dominant Negative (DN)
No data available
View complete mutation data:
Gene Ontology (GO)
| • DNA-binding transcription factor activity (GO:0003700) | • zinc ion binding (GO:0008270) |
| • nucleus (GO:0005634) | • regulation of transcription by RNA polymerase II (GO:0006357) |
Pathways
• No curated pathways in Reactome or KEGG
Protein Summary
ZNF790 is a 598-amino acid protein containing a KRAB domain (residues 1–75) and 12 C2H2-type zinc finger domains (residues 100–580). The KRAB domain mediates transcriptional repression through interaction with KAP1/TRIM28, recruiting histone deacetylases and methyltransferases. The zinc fingers are predicted to bind specific DNA sequences, though target genes remain unidentified. Structural modeling suggests a compact conformation with zinc fingers arranged in a helical array. Post-translational modifications include phosphorylation sites (Ser/Thr) and potential ubiquitination, but experimental validation is lacking.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ZNF790 Knockout HEK293 Cell Line | EDJ-KQ16373 | Human | 388536 | Details Get a Quote |
| ZNF790 Knockout HeLa Cell Line | EDJ-KQ60030 | Human | 388536 | Details Get a Quote |
| ZNF790 Knockout A-549 Cell Line | EDJ-KQ68491 | Human | 388536 | Details Get a Quote |
| ZNF790 Knockout HCT 116 Cell Line | EDJ-KQ76869 | Human | 388536 | Details Get a Quote |
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