WNT1: A Key Regulator in Osteogenesis and Neurodevelopment

Comprehensive genomic and functional analysis of the WNT1 gene, its role in bone density disorders and cancer, and clinical implications.

Gene Information Card

Symbol WNT1
Full Name Wnt family member 1
Gene Type protein-coding
Chromosomal Location 12q13.12
NCBI Gene ID 7471 ncbi.nlm.nih.gov/gene/7471
Ensembl ID ENSG00000125084
UniProt ID P04628
OMIM ID 164820
HGNC ID 12765
Aliases INT1, OI15, BMND16

Description

WNT1 (Wnt family member 1) encodes a secreted signaling glycoprotein that is a member of the WNT gene family. It plays a critical role in embryonic development, particularly in the formation of the neural tube and the midbrain. In adults, WNT1 is essential for bone homeostasis by promoting osteoblast differentiation and bone formation. Mutations in WNT1 cause autosomal recessive osteogenesis imperfecta type XV and early-onset osteoporosis. Aberrant WNT1 signaling is also implicated in various cancers, including breast and lung cancer.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Osteogenesis imperfecta type XV Loss-of-function mutations impair Wnt signaling in osteoblasts, leading to reduced bone formation and severe skeletal fragility. OMIM #615220; ClinVar
Early-onset osteoporosis Heterozygous or homozygous WNT1 mutations disrupt bone density regulation, causing low bone mass and fractures. OMIM #615221; ClinVar
Breast cancer WNT1 acts as an oncogene; overexpression activates canonical Wnt/β-catenin pathway, promoting cell proliferation and tumorigenesis. COSMIC; PubMed studies
Lung cancer WNT1 signaling contributes to epithelial-mesenchymal transition and metastasis. COSMIC; PubMed studies

Expression Profile

Tissue Expression
Tissue nTPM level
Bone marrow 0.0 Not detected
Brain (cerebellum) 0.0 Not detected
Breast 0.0 Not detected
Lung 0.0 Not detected
Testis 0.0 Not detected
Cell Line Expression
Cell Line nTPM Notes
MCF7 (breast cancer) 0.0 No detectable expression in standard RNA-seq; low expression in some sublines
A549 (lung cancer) 0.0 Not detected
HEK293 (embryonic kidney) 0.0 Not detected
hFOB 1.19 (osteoblast) 0.0 Not detected in standard conditions; induced during differentiation
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.677C>T (p.Pro226Leu) Missense Rare Loss of function; associated with osteogenesis imperfecta
c.506G>A (p.Cys169Tyr) Missense Rare Loss of function; impairs secretion and signaling
c.1A>G (p.Met1Val) Start loss Rare Loss of function; no protein production
c.110T>C (p.Leu37Pro) Missense Rare Loss of function; disrupts protein folding
Mutation functional classification

Loss of Function (LOF)

Most WNT1 mutations in osteogenesis imperfecta and osteoporosis are loss-of-function, reducing or abolishing Wnt signaling in osteoblasts.

Gain of Function (GOF)

Gain-of-function mutations are rare; overexpression in cancer is often due to epigenetic or transcriptional upregulation rather than somatic mutation.

Dominant Negative (DN)

Some missense mutations may exert dominant-negative effects by forming non-functional complexes with wild-type WNT1 or other Wnt proteins.

Pathways

Wnt signaling pathway (KEGG hsa04310)
Signaling by WNT (Reactome R-HSA-195721)
Beta-catenin independent WNT signaling (Reactome R-HSA-3858494)
Osteoblast differentiation (Reactome R-HSA-8940973)

Protein Summary

WNT1 is a 370-amino-acid secreted glycoprotein with a signal peptide, a conserved Wnt domain, and multiple cysteine residues critical for proper folding and function. It binds to Frizzled receptors and LRP5/6 co-receptors to activate the canonical Wnt/β-catenin pathway, leading to transcription of target genes involved in cell proliferation, differentiation, and bone formation. Post-translational modifications include glycosylation and palmitoylation, which are essential for secretion and receptor binding.

Related Products

Product name Cat.No. Species Gene ID
WNT1 Knockout HEK293 Cell Line EDJ-KQ118 Human 7471 Details Get a Quote
WNT10A Knockout HEK293 Cell Line EDJ-KQ347 Human 80326 Details Get a Quote
WNT10B Knockout HEK293 Cell Line EDJ-KQ348 Human 7480 Details Get a Quote
WNT16 Knockout HEK293 Cell Line EDJ-KQ349 Human 51384 Details Get a Quote
WNT11 Knockout HEK293 Cell Line EDJ-KQ1188 Human 7481 Details Get a Quote
WNT10B Knockout A-549 Cell Line EDJ-KQ18529 Human 7480 Details Get a Quote
WNT10B Knockout HCT 116 Cell Line EDJ-KQ18530 Human 7480 Details Get a Quote
WNT10B Knockout HeLa Cell Line EDJ-KQ18531 Human 7480 Details Get a Quote
WNT16 Knockout HCT 116 Cell Line EDJ-KQ18532 Human 51384 Details Get a Quote
WNT1 Knockout HeLa Cell Line EDJ-KQ54749 Human 7471 Details Get a Quote
WNT11 Knockout HeLa Cell Line EDJ-KQ54755 Human 7481 Details Get a Quote
WNT16 Knockout HeLa Cell Line EDJ-KQ56304 Human 51384 Details Get a Quote
WNT10A Knockout HeLa Cell Line EDJ-KQ57327 Human 80326 Details Get a Quote
WNT1 Knockout A-549 Cell Line EDJ-KQ63243 Human 7471 Details Get a Quote
WNT11 Knockout A-549 Cell Line EDJ-KQ63250 Human 7481 Details Get a Quote
Displaying Records 1 To 15 Of 20 Records
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