TNFRSF13C (BAFF-R): B-Cell Survival Receptor and Immune Regulation Gene

Comprehensive genomic, functional, and clinical insights into TNFRSF13C, the BAFF receptor critical for B-cell maturation and antibody responses.

Gene Information Card

Symbol TNFRSF13C
Full Name TNF receptor superfamily member 13C
Gene Type protein-coding
Chromosomal Location 22q13.1
NCBI Gene ID 115650 ncbi.nlm.nih.gov/gene/115650
Ensembl ID ENSG00000159958
UniProt ID Q96RJ3
OMIM ID 606269
HGNC ID 17755
Aliases BAFFR, BAFF-R, BROMIX, CD268, CVID4, prolixin

Description

TNFRSF13C encodes the B-cell activating factor receptor (BAFF-R), a type III transmembrane protein of the tumor necrosis factor receptor superfamily. BAFF-R is predominantly expressed on mature B cells and binds the cytokine BAFF (B-cell activating factor, TNFSF13B). This interaction is essential for B-cell survival, maturation, and immunoglobulin production. The receptor signals through the NF-κB pathway via TRAF3 and TRAF6, promoting survival and preventing apoptosis. Mutations in TNFRSF13C can lead to common variable immunodeficiency (CVID) and other B-cell-related disorders. The gene is also implicated in autoimmune diseases and certain lymphomas.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Common variable immunodeficiency (CVID) Loss-of-function mutations in TNFRSF13C impair BAFF-R signaling, leading to reduced B-cell survival and antibody deficiency. ClinVar, OMIM (CVID4)
Immunoglobulin deficiency Defective BAFF-R disrupts B-cell maturation, causing low immunoglobulin levels and increased infection susceptibility. OMIM, PubMed
Multiple sclerosis (MS) Polymorphisms in TNFRSF13C have been associated with altered B-cell function and increased MS risk. GWAS studies, PubMed
Systemic lupus erythematosus (SLE) BAFF-R overexpression may contribute to autoreactive B-cell survival and autoantibody production. PubMed, experimental models
B-cell non-Hodgkin lymphoma Aberrant BAFF-R signaling can promote B-cell proliferation and survival, contributing to lymphomagenesis. COSMIC, PubMed
Chronic lymphocytic leukemia (CLL) BAFF-R is overexpressed in CLL cells, supporting tumor cell survival via BAFF autocrine loops. PubMed, COSMIC

Expression Profile

Tissue Expression
Tissue nTPM level
Spleen High (nTPM ~ 50) Strong expression in B-cell zones
Lymph node High (nTPM ~ 40) Germinal center B cells
Blood Moderate (nTPM ~ 20) Peripheral B cells
Bone marrow Low (nTPM ~ 5) Immature B cells
Tonsil High (nTPM ~ 45) B-cell rich tissue
Thymus Low (nTPM ~ 2) Minimal expression
Cell Line Expression
Cell Line nTPM Notes
Ramos (Burkitt lymphoma) High B-cell line with strong BAFF-R expression
Daudi (Burkitt lymphoma) High B-cell line
K562 (CML) Low Non-B-cell line, minimal expression
HeLa (cervical carcinoma) Low Non-B-cell line
Jurkat (T-ALL) Low T-cell line, no significant expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.80G>A (p.Cys27Tyr) Missense Rare (found in CVID patients) Impairs BAFF binding and receptor function
c.104A>G (p.His35Arg) Missense Rare (CVID) Disrupts BAFF-R signaling
c.160C>T (p.Pro54Ser) Missense Rare (CVID) Reduced B-cell survival
c.211C>T (p.Arg71Trp) Missense Rare (CVID) Loss of function
c.254T>C (p.Ile85Thr) Missense Rare (CVID) Impaired NF-κB activation
c.331G>A (p.Ala111Thr) Missense Rare (CVID) Reduced receptor expression
Mutation functional classification

Loss of Function (LOF)

Most TNFRSF13C mutations associated with CVID are loss-of-function, leading to reduced BAFF binding, impaired NF-κB signaling, and defective B-cell survival.

Gain of Function (GOF)

Gain-of-function mutations are rare but may occur in lymphomas, leading to constitutive BAFF-R signaling and enhanced B-cell proliferation.

Dominant Negative (DN)

Some missense mutations may exert dominant-negative effects by forming non-functional oligomers with wild-type receptors, further impairing signaling.

Gene Ontology (GO)

• GO:0005031 - tumor necrosis factor-activated receptor activity • GO:0004888 - transmembrane signaling receptor activity
• GO:0007165 - signal transduction • GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB signaling
• GO:0006955 - immune response • GO:0042102 - positive regulation of B cell proliferation
• GO:0001782 - B cell homeostasis • GO:0030890 - positive regulation of B cell apoptosis
• GO:0005886 - plasma membrane

Pathways

BAFF signaling in B-cell survival (NF-κB pathway)
TNF receptor superfamily signaling
B-cell receptor signaling
Apoptosis regulation
Primary immunodeficiency pathways

Protein Summary

The BAFF-R protein (UniProt Q96RJ3) is a 184-amino acid type III transmembrane receptor with a single extracellular cysteine-rich domain (CRD) that binds BAFF. It lacks a signal peptide and has a short cytoplasmic tail containing TRAF-binding motifs. Upon BAFF binding, BAFF-R recruits TRAF3 and TRAF6, leading to activation of the non-canonical NF-κB pathway (processing of p100 to p52) and canonical NF-κB pathway, promoting B-cell survival and maturation. The protein is expressed as a homotrimer on the cell surface. Mutations affecting the CRD or cytoplasmic domain disrupt ligand binding or signaling, causing immunodeficiency.

Related Products

Product name Cat.No. Species Gene ID
TNFRSF13C Knockout HEK293 Cell Line EDJ-KQ596 Human 115650 Details Get a Quote
TNFRSF13C Knockout HCT 116 Cell Line EDJ-KQ18036 Human 115650 Details Get a Quote
TNFRSF13C Knockout HeLa Cell Line EDJ-KQ57958 Human 115650 Details Get a Quote
TNFRSF13C Knockout A-549 Cell Line EDJ-KQ66448 Human 115650 Details Get a Quote
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