TNFRSF13C (BAFF-R): B-Cell Survival Receptor and Immune Regulation Gene
Comprehensive genomic, functional, and clinical insights into TNFRSF13C, the BAFF receptor critical for B-cell maturation and antibody responses.
Gene Information Card
| Symbol | TNFRSF13C |
|---|---|
| Full Name | TNF receptor superfamily member 13C |
| Gene Type | protein-coding |
| Chromosomal Location | 22q13.1 |
| NCBI Gene ID | 115650 ncbi.nlm.nih.gov/gene/115650 |
| Ensembl ID | ENSG00000159958 |
| UniProt ID | Q96RJ3 |
| OMIM ID | 606269 |
| HGNC ID | 17755 |
| Aliases | BAFFR, BAFF-R, BROMIX, CD268, CVID4, prolixin |
Description
TNFRSF13C encodes the B-cell activating factor receptor (BAFF-R), a type III transmembrane protein of the tumor necrosis factor receptor superfamily. BAFF-R is predominantly expressed on mature B cells and binds the cytokine BAFF (B-cell activating factor, TNFSF13B). This interaction is essential for B-cell survival, maturation, and immunoglobulin production. The receptor signals through the NF-κB pathway via TRAF3 and TRAF6, promoting survival and preventing apoptosis. Mutations in TNFRSF13C can lead to common variable immunodeficiency (CVID) and other B-cell-related disorders. The gene is also implicated in autoimmune diseases and certain lymphomas.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Common variable immunodeficiency (CVID) | Loss-of-function mutations in TNFRSF13C impair BAFF-R signaling, leading to reduced B-cell survival and antibody deficiency. | ClinVar, OMIM (CVID4) |
| Immunoglobulin deficiency | Defective BAFF-R disrupts B-cell maturation, causing low immunoglobulin levels and increased infection susceptibility. | OMIM, PubMed |
| Multiple sclerosis (MS) | Polymorphisms in TNFRSF13C have been associated with altered B-cell function and increased MS risk. | GWAS studies, PubMed |
| Systemic lupus erythematosus (SLE) | BAFF-R overexpression may contribute to autoreactive B-cell survival and autoantibody production. | PubMed, experimental models |
| B-cell non-Hodgkin lymphoma | Aberrant BAFF-R signaling can promote B-cell proliferation and survival, contributing to lymphomagenesis. | COSMIC, PubMed |
| Chronic lymphocytic leukemia (CLL) | BAFF-R is overexpressed in CLL cells, supporting tumor cell survival via BAFF autocrine loops. | PubMed, COSMIC |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Spleen | High (nTPM ~ 50) | Strong expression in B-cell zones |
| Lymph node | High (nTPM ~ 40) | Germinal center B cells |
| Blood | Moderate (nTPM ~ 20) | Peripheral B cells |
| Bone marrow | Low (nTPM ~ 5) | Immature B cells |
| Tonsil | High (nTPM ~ 45) | B-cell rich tissue |
| Thymus | Low (nTPM ~ 2) | Minimal expression |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Ramos (Burkitt lymphoma) | High | B-cell line with strong BAFF-R expression |
| Daudi (Burkitt lymphoma) | High | B-cell line |
| K562 (CML) | Low | Non-B-cell line, minimal expression |
| HeLa (cervical carcinoma) | Low | Non-B-cell line |
| Jurkat (T-ALL) | Low | T-cell line, no significant expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.80G>A (p.Cys27Tyr) | Missense | Rare (found in CVID patients) | Impairs BAFF binding and receptor function |
| c.104A>G (p.His35Arg) | Missense | Rare (CVID) | Disrupts BAFF-R signaling |
| c.160C>T (p.Pro54Ser) | Missense | Rare (CVID) | Reduced B-cell survival |
| c.211C>T (p.Arg71Trp) | Missense | Rare (CVID) | Loss of function |
| c.254T>C (p.Ile85Thr) | Missense | Rare (CVID) | Impaired NF-κB activation |
| c.331G>A (p.Ala111Thr) | Missense | Rare (CVID) | Reduced receptor expression |
Mutation functional classification
Loss of Function (LOF)
Most TNFRSF13C mutations associated with CVID are loss-of-function, leading to reduced BAFF binding, impaired NF-κB signaling, and defective B-cell survival.
Gain of Function (GOF)
Gain-of-function mutations are rare but may occur in lymphomas, leading to constitutive BAFF-R signaling and enhanced B-cell proliferation.
Dominant Negative (DN)
Some missense mutations may exert dominant-negative effects by forming non-functional oligomers with wild-type receptors, further impairing signaling.
View complete mutation data:
Gene Ontology (GO)
| • GO:0005031 - tumor necrosis factor-activated receptor activity | • GO:0004888 - transmembrane signaling receptor activity |
| • GO:0007165 - signal transduction | • GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB signaling |
| • GO:0006955 - immune response | • GO:0042102 - positive regulation of B cell proliferation |
| • GO:0001782 - B cell homeostasis | • GO:0030890 - positive regulation of B cell apoptosis |
| • GO:0005886 - plasma membrane |
Pathways
• BAFF signaling in B-cell survival (NF-κB pathway)
• TNF receptor superfamily signaling
• B-cell receptor signaling
• Apoptosis regulation
• Primary immunodeficiency pathways
Protein Summary
The BAFF-R protein (UniProt Q96RJ3) is a 184-amino acid type III transmembrane receptor with a single extracellular cysteine-rich domain (CRD) that binds BAFF. It lacks a signal peptide and has a short cytoplasmic tail containing TRAF-binding motifs. Upon BAFF binding, BAFF-R recruits TRAF3 and TRAF6, leading to activation of the non-canonical NF-κB pathway (processing of p100 to p52) and canonical NF-κB pathway, promoting B-cell survival and maturation. The protein is expressed as a homotrimer on the cell surface. Mutations affecting the CRD or cytoplasmic domain disrupt ligand binding or signaling, causing immunodeficiency.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| TNFRSF13C Knockout HEK293 Cell Line | EDJ-KQ596 | Human | 115650 | Details Get a Quote |
| TNFRSF13C Knockout HCT 116 Cell Line | EDJ-KQ18036 | Human | 115650 | Details Get a Quote |
| TNFRSF13C Knockout HeLa Cell Line | EDJ-KQ57958 | Human | 115650 | Details Get a Quote |
| TNFRSF13C Knockout A-549 Cell Line | EDJ-KQ66448 | Human | 115650 | Details Get a Quote |
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