SYNM (Synemin) Gene
Intermediate Filament Protein Gene
Gene Information Card
| Symbol | SYNM |
|---|---|
| Full Name | Synemin |
| Gene Type | protein-coding |
| Chromosomal Location | 15q26.3 |
| NCBI Gene ID | 23336 ncbi.nlm.nih.gov/gene/23336 |
| Ensembl ID | ENSG00000137809 |
| UniProt ID | O15061 |
| OMIM ID | 606087 |
| HGNC ID | 11466 |
| Aliases | DMN, synemin, desmuslin |
Description
The SYNM gene encodes synemin, a large intermediate filament protein that is a component of the cytoskeleton. Synemin is expressed primarily in muscle tissues (skeletal, cardiac, and smooth muscle) and in certain other cell types. It interacts with other intermediate filament proteins such as desmin and vimentin, and with Z-disc proteins, contributing to the structural integrity and mechanical stability of muscle cells. Synemin also plays roles in cell signaling, adhesion, and migration. Mutations and altered expression of SYNM have been associated with myopathies and various cancers.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Myopathy, myofibrillar, 9 (MFM9) | Mutations in SYNM disrupt intermediate filament network and Z-disc integrity, leading to muscle fiber degeneration. | OMIM #606087; ClinVar |
| Breast cancer | SYNM overexpression or downregulation may affect cell migration and invasion; altered expression linked to prognosis. | COSMIC; PubMed studies |
| Colorectal cancer | SYNM expression changes associated with tumor progression and metastasis. | COSMIC; PubMed studies |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Skeletal muscle | 57.3 | High |
| Heart muscle | 42.1 | High |
| Smooth muscle | 28.5 | Medium |
| Brain | 1.2 | Low |
| Liver | 0.5 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| A549 (lung) | 0.8 | Low expression |
| HeLa (cervical) | 1.1 | Low expression |
| MCF7 (breast) | 3.2 | Medium expression |
| HepG2 (liver) | 0.6 | Not detected |
| SK-MEL-28 (melanoma) | 2.5 | Medium expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234C>T (p.Arg412*) | Nonsense | <0.01% | Loss of function; associated with myopathy |
| c.1567G>A (p.Glu523Lys) | Missense | <0.01% | Unknown; reported in cancer |
| c.2101_2102insA | Frameshift | <0.01% | Loss of function; reported in myopathy |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations in SYNM lead to truncated or absent synemin protein, disrupting the intermediate filament network and causing muscle weakness and degeneration.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported for SYNM.
Dominant Negative (DN)
Missense mutations may exert dominant-negative effects by interfering with filament assembly, but evidence is limited.
View complete mutation data:
Gene Ontology (GO)
| • structural molecule activity | • intermediate filament cytoskeleton organization |
| • muscle contraction | • cell adhesion |
| • cell migration |
Pathways
• Intermediate filament organization
• Muscle contraction
• Cell adhesion (ECM-receptor interaction)
Protein Summary
Synemin is a 160-180 kDa intermediate filament protein that forms heteropolymers with desmin and vimentin. It contains a central alpha-helical rod domain and non-helical head and tail domains. Synemin localizes to Z-discs in striated muscle and dense bodies in smooth muscle, where it links the contractile apparatus to the cytoskeleton. It also interacts with signaling molecules such as alpha-actinin and vinculin, influencing cell adhesion and migration. Post-translational modifications include phosphorylation, which regulates filament dynamics.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SYNM Knockout HEK293 Cell Line | EDJ-KQ7975 | Human | 23336 | Details Get a Quote |
| SYNM Knockout A-549 Cell Line | EDJ-KQ33675 | Human | 23336 | Details Get a Quote |
| SYNM Knockout HCT 116 Cell Line | EDJ-KQ33676 | Human | 23336 | Details Get a Quote |
| SYNM Knockout HeLa Cell Line | EDJ-KQ33677 | Human | 23336 | Details Get a Quote |
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