SSR4 Gene - Signal Sequence Receptor Subunit 4
Comprehensive genomic and proteomic analysis of SSR4, a key component of the translocon complex involved in protein translocation across the endoplasmic reticulum membrane.
Gene Information Card
| Symbol | SSR4 |
|---|---|
| Full Name | Signal Sequence Receptor Subunit 4 |
| Gene Type | Protein coding |
| Chromosomal Location | Xq28 |
| NCBI Gene ID | 6748 ncbi.nlm.nih.gov/gene/6748 |
| Ensembl ID | ENSG00000180801 |
| UniProt ID | P51571 |
| OMIM ID | 300090 |
| HGNC ID | 11326 |
| Aliases | TRAPD, CDG2Y, SSR4, signal sequence receptor delta |
Description
The SSR4 gene encodes the delta subunit of the signal sequence receptor (SSR) complex, also known as the translocon-associated protein (TRAP) complex. This complex is a component of the translocon machinery in the endoplasmic reticulum (ER) membrane, facilitating the translocation of nascent polypeptides across the ER membrane. SSR4 is essential for proper protein translocation and glycosylation. Mutations in SSR4 cause congenital disorder of glycosylation type 2Y (CDG2Y), an autosomal recessive disorder characterized by neurological impairment, developmental delay, and dysmorphic features.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Congenital disorder of glycosylation type 2Y (CDG2Y) | Loss-of-function mutations in SSR4 impair the TRAP complex, leading to defective protein translocation and N-glycosylation in the ER, resulting in multisystemic disease. | OMIM #300090; ClinVar; PMID: 23352259 |
| Intellectual disability | SSR4 mutations are associated with X-linked intellectual disability due to disrupted ER function and glycosylation. | ClinVar; PMID: 23352259 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Liver | 10.2 | Medium |
| Kidney | 9.8 | Medium |
| Heart | 8.5 | Medium |
| Lung | 7.3 | Low |
| Pancreas | 6.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK 293 | 15.0 | High expression |
| HeLa | 12.3 | Medium expression |
| HepG2 | 11.5 | Medium expression |
| K562 | 8.9 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense | Rare | Loss of start codon, likely loss of function |
| c.2T>C (p.Met1?) | Missense | Rare | Loss of start codon, likely loss of function |
| c.3G>A (p.Met1?) | Missense | Rare | Loss of start codon, likely loss of function |
| c.4C>T (p.Arg2*) | Nonsense | Rare | Premature stop, loss of function |
| c.5G>A (p.Arg2Gln) | Missense | Rare | Likely loss of function |
Mutation functional classification
Loss of Function (LOF)
Most reported SSR4 mutations are loss-of-function, including missense, nonsense, and start-loss variants, leading to reduced or absent SSR4 protein and impaired TRAP complex function.
Gain of Function (GOF)
No gain-of-function mutations have been reported for SSR4.
Dominant Negative (DN)
No dominant-negative mutations have been reported for SSR4.
View complete mutation data:
Gene Ontology (GO)
Pathways
• R-HSA-1799339 - SRP-dependent cotranslational protein targeting to membrane
• R-HSA-392499 - Metabolism of proteins
• R-HSA-446203 - Asparagine N-linked glycosylation
• R-HSA-948021 - Translocation of proteins into the endoplasmic reticulum
Protein Summary
SSR4 (Signal Sequence Receptor Subunit 4) is a 173-amino acid protein with a molecular weight of approximately 19 kDa. It is an integral membrane protein localized to the endoplasmic reticulum (ER) membrane. As part of the TRAP complex (comprising SSR1, SSR2, SSR3, and SSR4), it binds signal sequences of nascent polypeptides and facilitates their translocation into the ER lumen. The protein is essential for proper N-glycosylation and protein folding. Defects in SSR4 lead to congenital disorder of glycosylation type 2Y (CDG2Y), characterized by neurological and developmental abnormalities.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SSR4 Knockout HEK293 Cell Line | EDJ-KQ15517 | Human | 6748 | Details Get a Quote |
| SSR4 Knockout A-549 Cell Line | EDJ-KQ45101 | Human | 6748 | Details Get a Quote |
| SSR4 Knockout HCT 116 Cell Line | EDJ-KQ46337 | Human | 6748 | Details Get a Quote |
| SSR4 Knockout HeLa Cell Line | EDJ-KQ46338 | Human | 6748 | Details Get a Quote |
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