SSR4 Gene - Signal Sequence Receptor Subunit 4

Comprehensive genomic and proteomic analysis of SSR4, a key component of the translocon complex involved in protein translocation across the endoplasmic reticulum membrane.

Gene Information Card

Symbol SSR4
Full Name Signal Sequence Receptor Subunit 4
Gene Type Protein coding
Chromosomal Location Xq28
NCBI Gene ID 6748 ncbi.nlm.nih.gov/gene/6748
Ensembl ID ENSG00000180801
UniProt ID P51571
OMIM ID 300090
HGNC ID 11326
Aliases TRAPD, CDG2Y, SSR4, signal sequence receptor delta

Description

The SSR4 gene encodes the delta subunit of the signal sequence receptor (SSR) complex, also known as the translocon-associated protein (TRAP) complex. This complex is a component of the translocon machinery in the endoplasmic reticulum (ER) membrane, facilitating the translocation of nascent polypeptides across the ER membrane. SSR4 is essential for proper protein translocation and glycosylation. Mutations in SSR4 cause congenital disorder of glycosylation type 2Y (CDG2Y), an autosomal recessive disorder characterized by neurological impairment, developmental delay, and dysmorphic features.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Congenital disorder of glycosylation type 2Y (CDG2Y) Loss-of-function mutations in SSR4 impair the TRAP complex, leading to defective protein translocation and N-glycosylation in the ER, resulting in multisystemic disease. OMIM #300090; ClinVar; PMID: 23352259
Intellectual disability SSR4 mutations are associated with X-linked intellectual disability due to disrupted ER function and glycosylation. ClinVar; PMID: 23352259

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.5 Medium
Liver 10.2 Medium
Kidney 9.8 Medium
Heart 8.5 Medium
Lung 7.3 Low
Pancreas 6.1 Low
Cell Line Expression
Cell Line nTPM Notes
HEK 293 15.0 High expression
HeLa 12.3 Medium expression
HepG2 11.5 Medium expression
K562 8.9 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) Missense Rare Loss of start codon, likely loss of function
c.2T>C (p.Met1?) Missense Rare Loss of start codon, likely loss of function
c.3G>A (p.Met1?) Missense Rare Loss of start codon, likely loss of function
c.4C>T (p.Arg2*) Nonsense Rare Premature stop, loss of function
c.5G>A (p.Arg2Gln) Missense Rare Likely loss of function
Mutation functional classification

Loss of Function (LOF)

Most reported SSR4 mutations are loss-of-function, including missense, nonsense, and start-loss variants, leading to reduced or absent SSR4 protein and impaired TRAP complex function.

Gain of Function (GOF)

No gain-of-function mutations have been reported for SSR4.

Dominant Negative (DN)

No dominant-negative mutations have been reported for SSR4.

Pathways

R-HSA-1799339 - SRP-dependent cotranslational protein targeting to membrane
R-HSA-392499 - Metabolism of proteins
R-HSA-446203 - Asparagine N-linked glycosylation
R-HSA-948021 - Translocation of proteins into the endoplasmic reticulum

Protein Summary

SSR4 (Signal Sequence Receptor Subunit 4) is a 173-amino acid protein with a molecular weight of approximately 19 kDa. It is an integral membrane protein localized to the endoplasmic reticulum (ER) membrane. As part of the TRAP complex (comprising SSR1, SSR2, SSR3, and SSR4), it binds signal sequences of nascent polypeptides and facilitates their translocation into the ER lumen. The protein is essential for proper N-glycosylation and protein folding. Defects in SSR4 lead to congenital disorder of glycosylation type 2Y (CDG2Y), characterized by neurological and developmental abnormalities.

Related Products

Product name Cat.No. Species Gene ID
SSR4 Knockout HEK293 Cell Line EDJ-KQ15517 Human 6748 Details Get a Quote
SSR4 Knockout A-549 Cell Line EDJ-KQ45101 Human 6748 Details Get a Quote
SSR4 Knockout HCT 116 Cell Line EDJ-KQ46337 Human 6748 Details Get a Quote
SSR4 Knockout HeLa Cell Line EDJ-KQ46338 Human 6748 Details Get a Quote
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