SPRED2: A Key Regulator of RAS-MAPK Signaling and Tumor Suppression

Comprehensive genomic and functional analysis of the SPRED2 gene, its role in Noonan syndrome, cancer, and neurodevelopmental disorders.

Gene Information Card

Symbol SPRED2
Full Name Sprouty-related EVH1 domain-containing protein 2
Gene Type Protein coding
Chromosomal Location 2p14
NCBI Gene ID 200734 ncbi.nlm.nih.gov/gene/200734
Ensembl ID ENSG00000115977
UniProt ID Q7Z698
OMIM ID 609292
HGNC ID 17702
Aliases SPRED-2, Spred2, EVH1 domain-containing protein 2

Description

SPRED2 (Sprouty-related EVH1 domain-containing protein 2) is a protein-coding gene located on chromosome 2p14. It encodes a member of the Sprouty/SPRED family of proteins that function as negative regulators of the RAS-MAPK signaling pathway. SPRED2 inhibits the activation of ERK by interacting with Ras and Raf, thereby modulating cell proliferation, differentiation, and migration. Loss-of-function mutations in SPRED2 are associated with Noonan syndrome and a neurofibromatosis type 1-like phenotype. The gene is also implicated in tumor suppression, with somatic mutations and reduced expression observed in various cancers, including melanoma, lung cancer, and leukemia.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Noonan syndrome Loss-of-function mutations impair negative regulation of RAS-MAPK signaling, leading to constitutive pathway activation. ClinVar, OMIM
Neurofibromatosis type 1-like phenotype Heterozygous germline mutations in SPRED2 cause a phenotype overlapping with NF1, including café-au-lait spots and learning difficulties. OMIM, PubMed
Melanoma Somatic mutations and reduced SPRED2 expression contribute to increased RAS-MAPK signaling and tumor progression. COSMIC, PubMed
Acute myeloid leukemia SPRED2 downregulation or loss promotes leukemogenesis via enhanced ERK signaling. COSMIC, PubMed
Lung cancer Epigenetic silencing or mutation of SPRED2 leads to uncontrolled cell proliferation. COSMIC, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.5 Medium
Heart 8.3 Low
Lung 6.1 Low
Liver 4.2 Low
Kidney 9.7 Low
Testis 15.8 Medium
Thyroid 11.2 Medium
Adipose tissue 5.4 Low
Cell Line Expression
Cell Line nTPM Notes
HEK 293 14.3 Embryonic kidney cells; moderate expression
A549 7.8 Lung carcinoma; low expression
MCF7 9.2 Breast cancer; low expression
K562 6.5 Leukemia; low expression
SH-SY5Y 18.1 Neuroblastoma; high expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) Missense Rare Loss of start codon; predicted loss of function
c.124C>T (p.Arg42*) Nonsense Rare Premature stop; loss of function
c.286_287del (p.Leu96fs) Frameshift Rare Frameshift; loss of function
c.403G>A (p.Gly135Arg) Missense Rare Impaired Ras binding; loss of function
c.788T>C (p.Leu263Pro) Missense Rare Disrupted EVH1 domain; loss of function
Mutation functional classification

Loss of Function (LOF)

The majority of reported SPRED2 mutations are loss-of-function, including nonsense, frameshift, and missense variants that impair protein stability or Ras-binding ability. These lead to disinhibition of RAS-MAPK signaling.

Gain of Function (GOF)

No gain-of-function mutations have been reported for SPRED2.

Dominant Negative (DN)

Some missense mutations may act in a dominant-negative manner by sequestering interacting partners, but evidence is limited.

Pathways

RAS-MAPK signaling pathway (KEGG: hsa04010)
Signaling by Receptor Tyrosine Kinases (Reactome: R-HSA-9006934)
Negative regulation of MAPK pathway (Reactome: R-HSA-5675220)
Signaling by RAS mutants (Reactome: R-HSA-6802949)

Protein Summary

SPRED2 is a 418-amino acid protein containing an N-terminal EVH1 domain and a C-terminal Sprouty-related domain. It localizes to the cytoplasm and plasma membrane, where it binds to Ras and Raf, preventing ERK phosphorylation. SPRED2 acts as a tumor suppressor by restraining mitogenic signaling. Its expression is regulated by transcription factors such as ETS1 and is frequently silenced in cancers via promoter methylation or mutation. The protein also interacts with other signaling molecules, including c-Kit and FLT3, modulating hematopoietic cell growth.

Related Products

Product name Cat.No. Species Gene ID
SPRED2 Knockout HEK293 Cell Line EDJ-KQ4588 Human 200734 Details Get a Quote
SPRED2 Knockout A-549 Cell Line EDJ-KQ27245 Human 200734 Details Get a Quote
SPRED2 Knockout HCT 116 Cell Line EDJ-KQ27246 Human 200734 Details Get a Quote
SPRED2 Knockout HeLa Cell Line EDJ-KQ27247 Human 200734 Details Get a Quote
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