SPRED2: A Key Regulator of RAS-MAPK Signaling and Tumor Suppression
Comprehensive genomic and functional analysis of the SPRED2 gene, its role in Noonan syndrome, cancer, and neurodevelopmental disorders.
Gene Information Card
| Symbol | SPRED2 |
|---|---|
| Full Name | Sprouty-related EVH1 domain-containing protein 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 2p14 |
| NCBI Gene ID | 200734 ncbi.nlm.nih.gov/gene/200734 |
| Ensembl ID | ENSG00000115977 |
| UniProt ID | Q7Z698 |
| OMIM ID | 609292 |
| HGNC ID | 17702 |
| Aliases | SPRED-2, Spred2, EVH1 domain-containing protein 2 |
Description
SPRED2 (Sprouty-related EVH1 domain-containing protein 2) is a protein-coding gene located on chromosome 2p14. It encodes a member of the Sprouty/SPRED family of proteins that function as negative regulators of the RAS-MAPK signaling pathway. SPRED2 inhibits the activation of ERK by interacting with Ras and Raf, thereby modulating cell proliferation, differentiation, and migration. Loss-of-function mutations in SPRED2 are associated with Noonan syndrome and a neurofibromatosis type 1-like phenotype. The gene is also implicated in tumor suppression, with somatic mutations and reduced expression observed in various cancers, including melanoma, lung cancer, and leukemia.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Noonan syndrome | Loss-of-function mutations impair negative regulation of RAS-MAPK signaling, leading to constitutive pathway activation. | ClinVar, OMIM |
| Neurofibromatosis type 1-like phenotype | Heterozygous germline mutations in SPRED2 cause a phenotype overlapping with NF1, including café-au-lait spots and learning difficulties. | OMIM, PubMed |
| Melanoma | Somatic mutations and reduced SPRED2 expression contribute to increased RAS-MAPK signaling and tumor progression. | COSMIC, PubMed |
| Acute myeloid leukemia | SPRED2 downregulation or loss promotes leukemogenesis via enhanced ERK signaling. | COSMIC, PubMed |
| Lung cancer | Epigenetic silencing or mutation of SPRED2 leads to uncontrolled cell proliferation. | COSMIC, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Heart | 8.3 | Low |
| Lung | 6.1 | Low |
| Liver | 4.2 | Low |
| Kidney | 9.7 | Low |
| Testis | 15.8 | Medium |
| Thyroid | 11.2 | Medium |
| Adipose tissue | 5.4 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK 293 | 14.3 | Embryonic kidney cells; moderate expression |
| A549 | 7.8 | Lung carcinoma; low expression |
| MCF7 | 9.2 | Breast cancer; low expression |
| K562 | 6.5 | Leukemia; low expression |
| SH-SY5Y | 18.1 | Neuroblastoma; high expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense | Rare | Loss of start codon; predicted loss of function |
| c.124C>T (p.Arg42*) | Nonsense | Rare | Premature stop; loss of function |
| c.286_287del (p.Leu96fs) | Frameshift | Rare | Frameshift; loss of function |
| c.403G>A (p.Gly135Arg) | Missense | Rare | Impaired Ras binding; loss of function |
| c.788T>C (p.Leu263Pro) | Missense | Rare | Disrupted EVH1 domain; loss of function |
Mutation functional classification
Loss of Function (LOF)
The majority of reported SPRED2 mutations are loss-of-function, including nonsense, frameshift, and missense variants that impair protein stability or Ras-binding ability. These lead to disinhibition of RAS-MAPK signaling.
Gain of Function (GOF)
No gain-of-function mutations have been reported for SPRED2.
Dominant Negative (DN)
Some missense mutations may act in a dominant-negative manner by sequestering interacting partners, but evidence is limited.
View complete mutation data:
Gene Ontology (GO)
Pathways
• RAS-MAPK signaling pathway (KEGG: hsa04010)
• Signaling by Receptor Tyrosine Kinases (Reactome: R-HSA-9006934)
• Negative regulation of MAPK pathway (Reactome: R-HSA-5675220)
• Signaling by RAS mutants (Reactome: R-HSA-6802949)
Protein Summary
SPRED2 is a 418-amino acid protein containing an N-terminal EVH1 domain and a C-terminal Sprouty-related domain. It localizes to the cytoplasm and plasma membrane, where it binds to Ras and Raf, preventing ERK phosphorylation. SPRED2 acts as a tumor suppressor by restraining mitogenic signaling. Its expression is regulated by transcription factors such as ETS1 and is frequently silenced in cancers via promoter methylation or mutation. The protein also interacts with other signaling molecules, including c-Kit and FLT3, modulating hematopoietic cell growth.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SPRED2 Knockout HEK293 Cell Line | EDJ-KQ4588 | Human | 200734 | Details Get a Quote |
| SPRED2 Knockout A-549 Cell Line | EDJ-KQ27245 | Human | 200734 | Details Get a Quote |
| SPRED2 Knockout HCT 116 Cell Line | EDJ-KQ27246 | Human | 200734 | Details Get a Quote |
| SPRED2 Knockout HeLa Cell Line | EDJ-KQ27247 | Human | 200734 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records