SPNS2: Sphingolipid Transporter 2
Key regulator of sphingosine-1-phosphate (S1P) export and immune cell trafficking
Gene Information Card
| Symbol | SPNS2 |
|---|---|
| Full Name | SPNS2, sphingolipid transporter 2 |
| Gene Type | protein-coding |
| Chromosomal Location | 17p13.2 |
| NCBI Gene ID | 124976 ncbi.nlm.nih.gov/gene/124976 |
| Ensembl ID | ENSG00000187764 |
| UniProt ID | Q8IV38 |
| OMIM ID | 612584 |
| HGNC ID | 26995 |
| Aliases | FLJ11184, MFSD7B, spinster homolog 2 (Drosophila) |
Description
SPNS2 encodes a transmembrane protein belonging to the major facilitator superfamily (MFS). It functions as a transporter of sphingosine-1-phosphate (S1P) across the plasma membrane, facilitating S1P export from cells. This export is critical for S1P receptor signaling, which regulates lymphocyte egress from lymphoid organs, vascular development, and auditory function. Mutations in SPNS2 cause autosomal recessive primary lymphedema with or without sensorineural hearing loss.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Primary lymphedema with or without sensorineural hearing loss (LMPH1D) | Loss-of-function mutations impair S1P export, disrupting lymphatic endothelial cell migration and cochlear homeostasis | OMIM #615907; ClinVar |
| Hereditary hearing loss (non-syndromic) | Defective S1P transport in inner ear cells leads to impaired auditory function | OMIM; PubMed studies |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lymph node | 15.2 | Medium |
| Spleen | 12.8 | Medium |
| Lung | 9.5 | Low |
| Kidney | 8.1 | Low |
| Liver | 6.3 | Low |
| Heart | 5.4 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK 293 | 18.7 | High expression in transfected cells |
| HUVEC | 14.3 | Endothelial cell line |
| Jurkat | 11.2 | T-cell line |
| HeLa | 7.8 | Moderate expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.995G>A (p.Arg332Gln) | Missense | Rare | Loss of S1P transport activity; associated with lymphedema |
| c.1043C>T (p.Pro348Leu) | Missense | Rare | Impaired protein function; hearing loss |
| c.1246C>T (p.Arg416*) | Nonsense | Rare | Premature truncation; loss of function |
Mutation functional classification
Loss of Function (LOF)
Missense and nonsense mutations (e.g., p.Arg332Gln, p.Arg416*) reduce or abolish S1P export, leading to lymphedema and hearing loss.
Gain of Function (GOF)
Not reported in SPNS2.
Dominant Negative (DN)
Not reported; disease is autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
| • integral component of plasma membrane (GO:0005887) | • sphingolipid transporter activity (GO:0015245) |
| • cholesterol transport (GO:0030301) | • extracellular exosome (GO:0070062) |
| • sphingolipid biosynthetic process (GO:0030148) |
Pathways
• Sphingosine-1-phosphate (S1P) signaling pathway
• Lymphocyte egress from lymphoid organs
• Lymphatic vessel development
Protein Summary
SPNS2 is a 549-amino acid multi-pass transmembrane protein with 12 predicted transmembrane helices. It belongs to the MFS family and specifically exports sphingosine-1-phosphate (S1P) from cells. S1P export by SPNS2 is essential for maintaining S1P gradients that guide lymphocyte trafficking and lymphatic endothelial cell migration. The protein is expressed in endothelial cells, lymphocytes, and inner ear tissues. Loss-of-function mutations cause primary lymphedema and sensorineural hearing loss.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SPNS2 Knockout HEK293 Cell Line | EDJ-KQ8684 | Human | 124976 | Details Get a Quote |
| SPNS2 Knockout A-549 Cell Line | EDJ-KQ34888 | Human | 124976 | Details Get a Quote |
| SPNS2 Knockout HCT 116 Cell Line | EDJ-KQ34889 | Human | 124976 | Details Get a Quote |
| SPNS2 Knockout HeLa Cell Line | EDJ-KQ34890 | Human | 124976 | Details Get a Quote |
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