SPNS2: Sphingolipid Transporter 2

Key regulator of sphingosine-1-phosphate (S1P) export and immune cell trafficking

Gene Information Card

Symbol SPNS2
Full Name SPNS2, sphingolipid transporter 2
Gene Type protein-coding
Chromosomal Location 17p13.2
NCBI Gene ID 124976 ncbi.nlm.nih.gov/gene/124976
Ensembl ID ENSG00000187764
UniProt ID Q8IV38
OMIM ID 612584
HGNC ID 26995
Aliases FLJ11184, MFSD7B, spinster homolog 2 (Drosophila)

Description

SPNS2 encodes a transmembrane protein belonging to the major facilitator superfamily (MFS). It functions as a transporter of sphingosine-1-phosphate (S1P) across the plasma membrane, facilitating S1P export from cells. This export is critical for S1P receptor signaling, which regulates lymphocyte egress from lymphoid organs, vascular development, and auditory function. Mutations in SPNS2 cause autosomal recessive primary lymphedema with or without sensorineural hearing loss.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Primary lymphedema with or without sensorineural hearing loss (LMPH1D) Loss-of-function mutations impair S1P export, disrupting lymphatic endothelial cell migration and cochlear homeostasis OMIM #615907; ClinVar
Hereditary hearing loss (non-syndromic) Defective S1P transport in inner ear cells leads to impaired auditory function OMIM; PubMed studies

Expression Profile

Tissue Expression
Tissue nTPM level
Lymph node 15.2 Medium
Spleen 12.8 Medium
Lung 9.5 Low
Kidney 8.1 Low
Liver 6.3 Low
Heart 5.4 Low
Cell Line Expression
Cell Line nTPM Notes
HEK 293 18.7 High expression in transfected cells
HUVEC 14.3 Endothelial cell line
Jurkat 11.2 T-cell line
HeLa 7.8 Moderate expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.995G>A (p.Arg332Gln) Missense Rare Loss of S1P transport activity; associated with lymphedema
c.1043C>T (p.Pro348Leu) Missense Rare Impaired protein function; hearing loss
c.1246C>T (p.Arg416*) Nonsense Rare Premature truncation; loss of function
Mutation functional classification

Loss of Function (LOF)

Missense and nonsense mutations (e.g., p.Arg332Gln, p.Arg416*) reduce or abolish S1P export, leading to lymphedema and hearing loss.

Gain of Function (GOF)

Not reported in SPNS2.

Dominant Negative (DN)

Not reported; disease is autosomal recessive.

Pathways

Sphingosine-1-phosphate (S1P) signaling pathway
Lymphocyte egress from lymphoid organs
Lymphatic vessel development

Protein Summary

SPNS2 is a 549-amino acid multi-pass transmembrane protein with 12 predicted transmembrane helices. It belongs to the MFS family and specifically exports sphingosine-1-phosphate (S1P) from cells. S1P export by SPNS2 is essential for maintaining S1P gradients that guide lymphocyte trafficking and lymphatic endothelial cell migration. The protein is expressed in endothelial cells, lymphocytes, and inner ear tissues. Loss-of-function mutations cause primary lymphedema and sensorineural hearing loss.

Related Products

Product name Cat.No. Species Gene ID
SPNS2 Knockout HEK293 Cell Line EDJ-KQ8684 Human 124976 Details Get a Quote
SPNS2 Knockout A-549 Cell Line EDJ-KQ34888 Human 124976 Details Get a Quote
SPNS2 Knockout HCT 116 Cell Line EDJ-KQ34889 Human 124976 Details Get a Quote
SPNS2 Knockout HeLa Cell Line EDJ-KQ34890 Human 124976 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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