SOX10 Gene

SRY-Box Transcription Factor 10: Key Regulator of Neural Crest Development and Melanocyte Differentiation

Gene Information Card

Symbol SOX10
Full Name SRY-Box Transcription Factor 10
Gene Type Protein coding
Chromosomal Location 22q13.1
NCBI Gene ID 6663 ncbi.nlm.nih.gov/gene/6663
Ensembl ID ENSG00000100146
UniProt ID P56693
OMIM ID 602229
HGNC ID 11190
Aliases DOM, MGC156697, PCWH, WS4, WS2E, WS4C

Description

SOX10 (SRY-Box Transcription Factor 10) is a protein-coding gene located on chromosome 22q13.1. It encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and cell fate determination. SOX10 is essential for neural crest cell survival, migration, and differentiation, particularly in melanocytes, glial cells, and enteric neurons. Mutations in SOX10 are associated with Waardenburg syndrome types 2E and 4C, PCWH (peripheral demyelinating neuropathy, central dysmyelinating leukodystrophy, Waardenburg syndrome, and Hirschsprung disease), and isolated Hirschsprung disease.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Waardenburg syndrome type 2E Loss-of-function mutations in SOX10 disrupt melanocyte development, leading to pigmentary abnormalities and sensorineural hearing loss. ClinVar, OMIM
Waardenburg syndrome type 4C (with Hirschsprung disease) SOX10 mutations impair enteric neuron differentiation, causing aganglionic megacolon (Hirschsprung disease) combined with Waardenburg features. OMIM, NCBI
PCWH syndrome Dominant-negative or severe loss-of-function mutations in SOX10 cause peripheral neuropathy, central leukodystrophy, Waardenburg syndrome, and Hirschsprung disease. OMIM, ClinVar
Hirschsprung disease (isolated) Rare SOX10 missense or nonsense variants reduce enteric neural crest cell migration, leading to colonic aganglionosis. NCBI, ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Skin 12.5 Medium
Brain (cerebellum) 8.3 Low
Brain (cortex) 6.1 Low
Adipose tissue 4.2 Low
Heart 2.1 Not detected
Liver 0.8 Not detected
Cell Line Expression
Cell Line nTPM Notes
SK-MEL-28 (melanoma) 15.0 High expression; consistent with melanocyte lineage
A375 (melanoma) 12.3 High expression
SH-SY5Y (neuroblastoma) 9.5 Moderate expression
HEK293 (embryonic kidney) 0.5 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.325C>T (p.Arg109*) Nonsense Rare Loss of function; truncation of HMG domain
c.482G>A (p.Gly161Asp) Missense Rare Impaired DNA binding; dominant-negative effect
c.698_699del (p.Glu233Valfs*12) Frameshift Rare Loss of function; premature termination
c.1076delC (p.Pro359Leufs*24) Frameshift Rare Loss of function; associated with PCWH
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and splice-site mutations that lead to haploinsufficiency or truncated protein lacking transactivation domain; associated with Waardenburg syndrome type 2E and Hirschsprung disease.

Gain of Function (GOF)

Not reported for SOX10; no activating mutations described in literature or curated databases.

Dominant Negative (DN)

Missense mutations in the HMG domain (e.g., p.Gly161Asp) that retain DNA binding but disrupt transcriptional activation; cause severe PCWH syndrome.

Pathways

• Neural crest differentiation (WP2064)
• Melanogenesis (KEGG hsa04916)
• Signaling pathways regulating pluripotency of stem cells (KEGG hsa04550)
• Transcriptional regulation of white adipocyte differentiation (WP287)

Protein Summary

SOX10 is a 466-amino-acid transcription factor containing a conserved HMG (high-mobility group) DNA-binding domain and a C-terminal transactivation domain. It forms homodimers or heterodimers with other SOX proteins (e.g., SOX9, SOX8) to regulate target genes such as MITF, TYR, and EDNRB. SOX10 is critical for neural crest cell specification, melanocyte survival, and myelination in the peripheral nervous system. Post-translational modifications include phosphorylation and sumoylation, which modulate its transcriptional activity. Mutations in SOX10 cause a spectrum of neurocristopathies, with dominant-negative variants leading to more severe phenotypes.

Related Products

Product name Cat.No. Species Gene ID
SOX10 Knockout HEK293 Cell Line EDJ-KQ5825 Human 6663 Details Get a Quote
SOX10 Knockout HeLa Cell Line EDJ-KQ54539 Human 6663 Details Get a Quote
SOX10 Knockout A-549 Cell Line EDJ-KQ63023 Human 6663 Details Get a Quote
SOX10 Knockout HCT 116 Cell Line EDJ-KQ71499 Human 6663 Details Get a Quote
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