SLC6A5: Glycine Transporter 2 (GlyT2) Gene
Solute Carrier Family 6 Member 5 – Key Regulator of Glycinergic Neurotransmission
Gene Information Card
| Symbol | SLC6A5 |
|---|---|
| Full Name | Solute Carrier Family 6 Member 5 |
| Gene Type | Protein-coding |
| Chromosomal Location | 11p15.1 |
| NCBI Gene ID | 9152 ncbi.nlm.nih.gov/gene/9152 |
| Ensembl ID | ENSG00000165970 |
| UniProt ID | Q9Y345 |
| OMIM ID | 604159 |
| HGNC ID | 11045 |
| Aliases | GlyT2, NET1, SLC6A5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5 |
Description
SLC6A5 encodes the glycine transporter 2 (GlyT2), a sodium- and chloride-dependent transmembrane protein responsible for the reuptake of glycine from the synaptic cleft into presynaptic neurons. This transporter is essential for terminating glycinergic neurotransmission and maintaining low extracellular glycine concentrations. Mutations in SLC6A5 cause hyperekplexia (startle disease), a neurological disorder characterized by exaggerated startle responses and neonatal hypertonia. The gene is predominantly expressed in the brainstem and spinal cord.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hyperekplexia 3 (hereditary startle disease) | Loss-of-function mutations impair glycine reuptake, leading to excess synaptic glycine and hyperexcitability of motor neurons. | ClinVar, OMIM #614618 |
| Hyperekplexia (general) | Missense, nonsense, and frameshift variants reduce GlyT2 expression or transport activity. | NCBI Gene, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 0.0 | Not detected |
| Spinal cord | 12.5 | Medium |
| Medulla oblongata | 8.2 | Low |
| Cerebellum | 0.3 | Not detected |
| Testis | 0.0 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 0.0 | Not expressed |
| U-87 MG (glioblastoma) | 0.0 | Not expressed |
| H4 (neuroglioma) | 0.0 | Not expressed |
| SK-N-SH (neuroblastoma) | 0.0 | Not expressed |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1195C>T (p.Arg399*) | Nonsense | <0.01% | Loss of function – premature truncation |
| c.1286G>A (p.Arg429His) | Missense | <0.01% | Loss of function – impaired transport activity |
| c.1483C>T (p.Arg495Cys) | Missense | <0.01% | Loss of function – reduced cell surface expression |
| c.2002C>T (p.Arg668*) | Nonsense | <0.01% | Loss of function – premature truncation |
Mutation functional classification
Loss of Function (LOF)
Most SLC6A5 mutations are loss-of-function, reducing glycine reuptake and causing hyperekplexia.
Gain of Function (GOF)
No gain-of-function mutations reported.
Dominant Negative (DN)
Some missense variants may exert dominant-negative effects by dimerizing with wild-type GlyT2.
View complete mutation data:
Gene Ontology (GO)
| • neurotransmitter:sodium symporter activity (GO:0005328) | • symporter activity (GO:0015293) |
| • glycine:sodium symporter activity (GO:0015375) | • glycine transport (GO:0015811) |
| • neurotransmitter transport (GO:0006836) | • integral component of plasma membrane (GO:0005887) |
| • integral component of membrane (GO:0016021) |
Pathways
• REACT:13685 – Neurotransmitter release cycle
• REACT:13686 – Glycine degradation
• REACT:13687 – Transport of inorganic cations/anions and amino acids/oligopeptides
Protein Summary
The SLC6A5 protein (GlyT2) is a 799-amino acid transmembrane transporter with 12 putative transmembrane domains. It belongs to the SLC6 family of sodium- and chloride-dependent neurotransmitter transporters. GlyT2 is primarily localized to presynaptic terminals of glycinergic neurons in the spinal cord and brainstem, where it clears glycine from the synapse. The protein requires Na+ and Cl- for substrate binding and transport. Mutations that disrupt its trafficking, expression, or transport activity lead to hyperekplexia.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLC6A5 Knockout HEK293 Cell Line | EDJ-KQ5817 | Human | 9152 | Details Get a Quote |
| SLC6A5 Knockout HeLa Cell Line | EDJ-KQ55092 | Human | 9152 | Details Get a Quote |
| SLC6A5 Knockout A-549 Cell Line | EDJ-KQ63572 | Human | 9152 | Details Get a Quote |
| SLC6A5 Knockout HCT 116 Cell Line | EDJ-KQ72038 | Human | 9152 | Details Get a Quote |
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