SLC6A5: Glycine Transporter 2 (GlyT2) Gene

Solute Carrier Family 6 Member 5 – Key Regulator of Glycinergic Neurotransmission

Gene Information Card

Symbol SLC6A5
Full Name Solute Carrier Family 6 Member 5
Gene Type Protein-coding
Chromosomal Location 11p15.1
NCBI Gene ID 9152 ncbi.nlm.nih.gov/gene/9152
Ensembl ID ENSG00000165970
UniProt ID Q9Y345
OMIM ID 604159
HGNC ID 11045
Aliases GlyT2, NET1, SLC6A5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5

Description

SLC6A5 encodes the glycine transporter 2 (GlyT2), a sodium- and chloride-dependent transmembrane protein responsible for the reuptake of glycine from the synaptic cleft into presynaptic neurons. This transporter is essential for terminating glycinergic neurotransmission and maintaining low extracellular glycine concentrations. Mutations in SLC6A5 cause hyperekplexia (startle disease), a neurological disorder characterized by exaggerated startle responses and neonatal hypertonia. The gene is predominantly expressed in the brainstem and spinal cord.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hyperekplexia 3 (hereditary startle disease) Loss-of-function mutations impair glycine reuptake, leading to excess synaptic glycine and hyperexcitability of motor neurons. ClinVar, OMIM #614618
Hyperekplexia (general) Missense, nonsense, and frameshift variants reduce GlyT2 expression or transport activity. NCBI Gene, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 0.0 Not detected
Spinal cord 12.5 Medium
Medulla oblongata 8.2 Low
Cerebellum 0.3 Not detected
Testis 0.0 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 0.0 Not expressed
U-87 MG (glioblastoma) 0.0 Not expressed
H4 (neuroglioma) 0.0 Not expressed
SK-N-SH (neuroblastoma) 0.0 Not expressed
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1195C>T (p.Arg399*) Nonsense <0.01% Loss of function – premature truncation
c.1286G>A (p.Arg429His) Missense <0.01% Loss of function – impaired transport activity
c.1483C>T (p.Arg495Cys) Missense <0.01% Loss of function – reduced cell surface expression
c.2002C>T (p.Arg668*) Nonsense <0.01% Loss of function – premature truncation
Mutation functional classification

Loss of Function (LOF)

Most SLC6A5 mutations are loss-of-function, reducing glycine reuptake and causing hyperekplexia.

Gain of Function (GOF)

No gain-of-function mutations reported.

Dominant Negative (DN)

Some missense variants may exert dominant-negative effects by dimerizing with wild-type GlyT2.

Gene Ontology (GO)

neurotransmitter:sodium symporter activity (GO:0005328) symporter activity (GO:0015293)
• glycine:sodium symporter activity (GO:0015375) glycine transport (GO:0015811)
neurotransmitter transport (GO:0006836) • integral component of plasma membrane (GO:0005887)
• integral component of membrane (GO:0016021)

Pathways

REACT:13685 – Neurotransmitter release cycle
REACT:13686 – Glycine degradation
REACT:13687 – Transport of inorganic cations/anions and amino acids/oligopeptides

Protein Summary

The SLC6A5 protein (GlyT2) is a 799-amino acid transmembrane transporter with 12 putative transmembrane domains. It belongs to the SLC6 family of sodium- and chloride-dependent neurotransmitter transporters. GlyT2 is primarily localized to presynaptic terminals of glycinergic neurons in the spinal cord and brainstem, where it clears glycine from the synapse. The protein requires Na+ and Cl- for substrate binding and transport. Mutations that disrupt its trafficking, expression, or transport activity lead to hyperekplexia.

Related Products

Product name Cat.No. Species Gene ID
SLC6A5 Knockout HEK293 Cell Line EDJ-KQ5817 Human 9152 Details Get a Quote
SLC6A5 Knockout HeLa Cell Line EDJ-KQ55092 Human 9152 Details Get a Quote
SLC6A5 Knockout A-549 Cell Line EDJ-KQ63572 Human 9152 Details Get a Quote
SLC6A5 Knockout HCT 116 Cell Line EDJ-KQ72038 Human 9152 Details Get a Quote
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