SLC4A10: Sodium Bicarbonate Cotransporter 3 (NBCn2)
Solute Carrier Family 4 Member 10 – Ion Transport and Neurological Disorders
Gene Information Card
| Symbol | SLC4A10 |
|---|---|
| Full Name | Solute Carrier Family 4 Member 10 |
| Gene Type | Protein-coding |
| Chromosomal Location | 2q24.2 |
| NCBI Gene ID | 57282 ncbi.nlm.nih.gov/gene/57282 |
| Ensembl ID | ENSG00000144218 |
| UniProt ID | Q6U841 |
| OMIM ID | 605556 |
| HGNC ID | 11025 |
| Aliases | NBCn2, NBC3, SLC4A10 |
Description
SLC4A10 encodes the electroneutral sodium bicarbonate cotransporter NBCn2 (also known as NBC3). This protein mediates the coupled movement of Na+ and HCO3- across the plasma membrane, playing a critical role in intracellular pH homeostasis, particularly in neurons and epithelial cells. NBCn2 is essential for normal brain development and function; loss-of-function mutations cause autosomal recessive intellectual disability, epilepsy, and developmental delay. The transporter is also expressed in kidney, heart, and other tissues, contributing to acid-base balance.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autosomal recessive intellectual disability with epilepsy | Loss of NBCn2 function disrupts neuronal pH regulation, impairing synaptic transmission and development | Multiple homozygous truncating mutations reported in families (PMID: 27545674) |
| Epileptic encephalopathy, early infantile | Biallelic SLC4A10 variants lead to severe seizure disorder and developmental regression | ClinVar, OMIM #605556 |
| Developmental and epileptic encephalopathy 96 (DEE96) | Impaired bicarbonate transport alters neuronal excitability and network synchronization | OMIM #619605 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain (cerebral cortex) | 12.3 | Medium |
| Kidney | 8.7 | Medium |
| Heart | 6.1 | Low |
| Lung | 4.5 | Low |
| Liver | 1.2 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 15.2 | High expression |
| HEK 293 (embryonic kidney) | 9.8 | Medium expression |
| HepG2 (hepatocellular carcinoma) | 2.1 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1663C>T (p.Arg555*) | Nonsense | Rare | Loss of function – premature truncation |
| c.2119_2120del (p.Leu707Valfs*13) | Frameshift deletion | Rare | Loss of function – frameshift and truncation |
| c.2450G>A (p.Arg817Gln) | Missense | Rare | Likely loss of function – impaired transport activity |
Mutation functional classification
Loss of Function (LOF)
Most reported SLC4A10 mutations are loss-of-function (nonsense, frameshift, missense with reduced transport), leading to autosomal recessive neurodevelopmental disorders.
Gain of Function (GOF)
No gain-of-function mutations have been described for SLC4A10.
Dominant Negative (DN)
No dominant-negative effects reported; disease inheritance is recessive.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Bicarbonate transporters (Reactome: R-HSA-425393)
• Ion transport by P-type ATPases (Reactome: R-HSA-936837)
• pH regulation in neurons (KEGG: map04970)
Protein Summary
NBCn2 (SLC4A10) is a 1089-amino acid transmembrane protein with 10-14 predicted helices. It functions as an electroneutral Na+/HCO3- cotransporter, importing Na+ and HCO3- with a 1:1 stoichiometry. The protein is highly expressed in brain, especially in neurons, where it regulates intracellular pH and modulates neuronal excitability. Structural studies reveal a conserved transporter fold with a central substrate-binding pocket. Mutations disrupting transport activity cause severe neurological phenotypes.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLC4A10 Knockout HEK293 Cell Line | EDJ-KQ15279 | Human | 57282 | Details Get a Quote |
| SLC4A10 Knockout HeLa Cell Line | EDJ-KQ56828 | Human | 57282 | Details Get a Quote |
| SLC4A10 Knockout A-549 Cell Line | EDJ-KQ65337 | Human | 57282 | Details Get a Quote |
| SLC4A10 Knockout HCT 116 Cell Line | EDJ-KQ73774 | Human | 57282 | Details Get a Quote |
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