SLC4A10: Sodium Bicarbonate Cotransporter 3 (NBCn2)

Solute Carrier Family 4 Member 10 – Ion Transport and Neurological Disorders

Gene Information Card

Symbol SLC4A10
Full Name Solute Carrier Family 4 Member 10
Gene Type Protein-coding
Chromosomal Location 2q24.2
NCBI Gene ID 57282 ncbi.nlm.nih.gov/gene/57282
Ensembl ID ENSG00000144218
UniProt ID Q6U841
OMIM ID 605556
HGNC ID 11025
Aliases NBCn2, NBC3, SLC4A10

Description

SLC4A10 encodes the electroneutral sodium bicarbonate cotransporter NBCn2 (also known as NBC3). This protein mediates the coupled movement of Na+ and HCO3- across the plasma membrane, playing a critical role in intracellular pH homeostasis, particularly in neurons and epithelial cells. NBCn2 is essential for normal brain development and function; loss-of-function mutations cause autosomal recessive intellectual disability, epilepsy, and developmental delay. The transporter is also expressed in kidney, heart, and other tissues, contributing to acid-base balance.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Autosomal recessive intellectual disability with epilepsy Loss of NBCn2 function disrupts neuronal pH regulation, impairing synaptic transmission and development Multiple homozygous truncating mutations reported in families (PMID: 27545674)
Epileptic encephalopathy, early infantile Biallelic SLC4A10 variants lead to severe seizure disorder and developmental regression ClinVar, OMIM #605556
Developmental and epileptic encephalopathy 96 (DEE96) Impaired bicarbonate transport alters neuronal excitability and network synchronization OMIM #619605

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 12.3 Medium
Kidney 8.7 Medium
Heart 6.1 Low
Lung 4.5 Low
Liver 1.2 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 15.2 High expression
HEK 293 (embryonic kidney) 9.8 Medium expression
HepG2 (hepatocellular carcinoma) 2.1 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1663C>T (p.Arg555*) Nonsense Rare Loss of function – premature truncation
c.2119_2120del (p.Leu707Valfs*13) Frameshift deletion Rare Loss of function – frameshift and truncation
c.2450G>A (p.Arg817Gln) Missense Rare Likely loss of function – impaired transport activity
Mutation functional classification

Loss of Function (LOF)

Most reported SLC4A10 mutations are loss-of-function (nonsense, frameshift, missense with reduced transport), leading to autosomal recessive neurodevelopmental disorders.

Gain of Function (GOF)

No gain-of-function mutations have been described for SLC4A10.

Dominant Negative (DN)

No dominant-negative effects reported; disease inheritance is recessive.

Pathways

Bicarbonate transporters (Reactome: R-HSA-425393)
Ion transport by P-type ATPases (Reactome: R-HSA-936837)
pH regulation in neurons (KEGG: map04970)

Protein Summary

NBCn2 (SLC4A10) is a 1089-amino acid transmembrane protein with 10-14 predicted helices. It functions as an electroneutral Na+/HCO3- cotransporter, importing Na+ and HCO3- with a 1:1 stoichiometry. The protein is highly expressed in brain, especially in neurons, where it regulates intracellular pH and modulates neuronal excitability. Structural studies reveal a conserved transporter fold with a central substrate-binding pocket. Mutations disrupting transport activity cause severe neurological phenotypes.

Related Products

Product name Cat.No. Species Gene ID
SLC4A10 Knockout HEK293 Cell Line EDJ-KQ15279 Human 57282 Details Get a Quote
SLC4A10 Knockout HeLa Cell Line EDJ-KQ56828 Human 57282 Details Get a Quote
SLC4A10 Knockout A-549 Cell Line EDJ-KQ65337 Human 57282 Details Get a Quote
SLC4A10 Knockout HCT 116 Cell Line EDJ-KQ73774 Human 57282 Details Get a Quote
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