SLC38A3: Solute Carrier Family 38 Member 3
Sodium-coupled neutral amino acid transporter 3 (SNAT3) – key glutamine transporter in brain and liver
Gene Information Card
| Symbol | SLC38A3 |
|---|---|
| Full Name | solute carrier family 38 member 3 |
| Gene Type | protein-coding |
| Chromosomal Location | 3p21.31 |
| NCBI Gene ID | 10991 ncbi.nlm.nih.gov/gene/10991 |
| Ensembl ID | ENSG00000114544 |
| UniProt ID | Q99624 |
| OMIM ID | 604437 |
| HGNC ID | 10946 |
| Aliases | SNAT3, G17, NAT1 |
Description
SLC38A3 encodes SNAT3 (sodium-coupled neutral amino acid transporter 3), a member of the SLC38 family. It mediates the sodium-dependent transport of neutral amino acids, particularly glutamine, with high affinity. SNAT3 is expressed predominantly in brain (astrocytes) and liver, where it plays a critical role in glutamine-glutamate cycling and hepatic urea synthesis. The transporter is bidirectional and can also function in efflux mode under certain conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hepatic encephalopathy | Impaired glutamine transport in astrocytes leads to ammonia accumulation and brain edema | PMID: 19265428 |
| Glutamine deficiency / metabolic disorders | Reduced SLC38A3 activity disrupts nitrogen shuttling between tissues | PMID: 21715563 |
| Cancer (glioma, hepatocellular carcinoma) | Altered glutamine uptake supports tumor growth and proliferation | PMID: 25642768 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | High |
| Liver | 8.3 | Medium |
| Kidney | 4.1 | Low |
| Pancreas | 2.0 | Low |
| Skeletal muscle | 0.8 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| U-87 MG (glioblastoma) | 15.2 | High expression |
| HepG2 (hepatocellular carcinoma) | 9.8 | Moderate expression |
| HEK293 (embryonic kidney) | 3.5 | Low expression |
| A549 (lung carcinoma) | 1.2 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.104C>T (p.Pro35Leu) | Missense | <0.01% | Unknown functional effect |
| c.457G>A (p.Gly153Ser) | Missense | <0.01% | Reduced glutamine transport activity (in vitro) |
| c.1120A>G (p.Thr374Ala) | Missense | <0.01% | No significant effect |
Mutation functional classification
Loss of Function (LOF)
p.Gly153Ser reduces glutamine uptake in heterologous expression systems.
Gain of Function (GOF)
No gain-of-function mutations reported.
Dominant Negative (DN)
No dominant-negative mutations reported.
View complete mutation data:
Gene Ontology (GO)
| • sodium:neutral amino acid symporter activity (GO:0005283) | • neutral amino acid transmembrane transporter activity (GO:0015175) |
| • glutamine transport (GO:0015816) | • alanine transport (GO:0015820) |
| • proline transport (GO:0015824) | • plasma membrane (GO:0005886) |
| • integral component of membrane (GO:0016021) |
Pathways
• REACT:116909 – Transport of glucose and other sugars
• bile salts and organic acids
• metal ions and amine compounds
• REACT:111045 – Amino acid transport across the plasma membrane
• WP:WP822 – Glutamine metabolism
• WP:WP364 – Urea cycle and metabolism of amino groups
Protein Summary
SNAT3 is a 504-amino acid transmembrane protein with 11 predicted membrane-spanning domains. It functions as a sodium-coupled symporter for neutral amino acids, with highest affinity for glutamine (Km ~0.5 mM). The protein is localized to the plasma membrane and is expressed in astrocytes, hepatocytes, and renal tubules. SNAT3 plays a key role in the glutamine-glutamate cycle in the brain and in hepatic nitrogen metabolism. Its expression is regulated by ammonia and pH, and it is implicated in cancer cell metabolism.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLC38A3 Knockout HEK293 Cell Line | EDJ-KQ7236 | Human | 10991 | Details Get a Quote |
| SLC38A3 Knockout HCT 116 Cell Line | EDJ-KQ32215 | Human | 10991 | Details Get a Quote |
| SLC38A3 Knockout HeLa Cell Line | EDJ-KQ55539 | Human | 10991 | Details Get a Quote |
| SLC38A3 Knockout A-549 Cell Line | EDJ-KQ64032 | Human | 10991 | Details Get a Quote |
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