SLC35B3: Solute Carrier Family 35 Member B3
A nucleotide-sugar transporter involved in glycosylation and potential disease associations.
Gene Information Card
| Symbol | SLC35B3 |
|---|---|
| Full Name | Solute carrier family 35 member B3 |
| Gene Type | Protein coding |
| Chromosomal Location | 6p21.1 |
| NCBI Gene ID | 51000 ncbi.nlm.nih.gov/gene/51000 |
| Ensembl ID | ENSG00000124713 |
| UniProt ID | Q9Y2A2 |
| OMIM ID | 610845 |
| HGNC ID | 20764 |
| Aliases | CGI-19, dJ453H5.1, MGC117188 |
Description
SLC35B3 (Solute carrier family 35 member B3) is a protein-coding gene located on chromosome 6p21.1. It encodes a member of the solute carrier family 35 (SLC35) of nucleotide-sugar transporters, which are integral membrane proteins localized to the Golgi apparatus. These transporters facilitate the import of nucleotide sugars from the cytosol into the Golgi lumen, where they are used as substrates for glycosylation reactions. SLC35B3 is predicted to transport UDP-glucuronic acid (UDP-GlcA) and other nucleotide sugars, playing a role in proteoglycan and glycoprotein biosynthesis. The gene is expressed in multiple tissues, with highest levels in the liver and kidney. Mutations in SLC35B3 have been associated with congenital disorders of glycosylation (CDG) and other metabolic conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Congenital disorder of glycosylation type IIn (CDG-IIn) | Defective UDP-GlcA transport leads to impaired glycosylation of proteins and proteoglycans | OMIM #610845; ClinVar |
| SLC35B3-related disorder (unspecified) | Loss-of-function mutations in SLC35B3 disrupt nucleotide-sugar transport, causing multisystem glycosylation defects | ClinVar; PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | High |
| Kidney | 9.8 | Medium |
| Pancreas | 7.2 | Medium |
| Heart | 5.1 | Low |
| Brain | 3.4 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 (liver cancer) | 14.2 | High expression |
| HEK293 (embryonic kidney) | 10.1 | Medium expression |
| A549 (lung cancer) | 6.8 | Low expression |
| K562 (leukemia) | 4.5 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense | <0.01% | Likely loss of start codon, loss of function |
| c.214C>T (p.Arg72Trp) | Missense | 0.02% | Impaired transporter activity |
| c.487G>A (p.Gly163Arg) | Missense | <0.01% | Reduced UDP-GlcA transport |
| c.632_633del (p.Glu211Glyfs*12) | Frameshift | <0.01% | Premature truncation, loss of function |
Mutation functional classification
Loss of Function (LOF)
Most reported mutations (e.g., frameshift, missense affecting transporter activity) are predicted to cause loss of function, leading to reduced UDP-GlcA transport and glycosylation defects.
Gain of Function (GOF)
No gain-of-function mutations have been reported for SLC35B3.
Dominant Negative (DN)
No dominant-negative mutations have been described; the disorder is typically autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
| • GO:0000139 (Golgi membrane) | • GO:0005459 (UDP-glucuronic acid transmembrane transporter activity) |
| • GO:0015780 (UDP-glucuronic acid transport) | • GO:0016021 (integral component of membrane) |
| • GO:0006486 (protein glycosylation) |
Pathways
• Nucleotide-sugar transport (Reactome: R-HSA-425407)
• Glycosaminoglycan metabolism (Reactome: R-HSA-1630316)
• Congenital disorders of glycosylation (KEGG: hsa00510)
Protein Summary
The SLC35B3 protein (UniProt Q9Y2A2) is a 324-amino acid multi-pass transmembrane protein localized to the Golgi apparatus. It functions as a nucleotide-sugar transporter, specifically transporting UDP-glucuronic acid (UDP-GlcA) from the cytosol into the Golgi lumen. This transport is essential for the biosynthesis of glycosaminoglycans (e.g., heparan sulfate, chondroitin sulfate) and glycoproteins. The protein contains 10 predicted transmembrane helices and a conserved nucleotide-sugar transporter domain. Defects in SLC35B3 lead to congenital disorder of glycosylation type IIn (CDG-IIn), characterized by developmental delay, hypotonia, and coagulation abnormalities.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLC35B3 Knockout HEK293 Cell Line | EDC08070 | Human | 51000 | Details Get a Quote |
| SLC35B3 Knockout A-549 Cell Line | EDJ-KQ38526 | Human | 51000 | Details Get a Quote |
| SLC35B3 Knockout HCT 116 Cell Line | EDJ-KQ38528 | Human | 51000 | Details Get a Quote |
| SLC35B3 Knockout HeLa Cell Line | EDJ-KQ38529 | Human | 51000 | Details Get a Quote |
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