SLC35B3: Solute Carrier Family 35 Member B3

A nucleotide-sugar transporter involved in glycosylation and potential disease associations.

Gene Information Card

Symbol SLC35B3
Full Name Solute carrier family 35 member B3
Gene Type Protein coding
Chromosomal Location 6p21.1
NCBI Gene ID 51000 ncbi.nlm.nih.gov/gene/51000
Ensembl ID ENSG00000124713
UniProt ID Q9Y2A2
OMIM ID 610845
HGNC ID 20764
Aliases CGI-19, dJ453H5.1, MGC117188

Description

SLC35B3 (Solute carrier family 35 member B3) is a protein-coding gene located on chromosome 6p21.1. It encodes a member of the solute carrier family 35 (SLC35) of nucleotide-sugar transporters, which are integral membrane proteins localized to the Golgi apparatus. These transporters facilitate the import of nucleotide sugars from the cytosol into the Golgi lumen, where they are used as substrates for glycosylation reactions. SLC35B3 is predicted to transport UDP-glucuronic acid (UDP-GlcA) and other nucleotide sugars, playing a role in proteoglycan and glycoprotein biosynthesis. The gene is expressed in multiple tissues, with highest levels in the liver and kidney. Mutations in SLC35B3 have been associated with congenital disorders of glycosylation (CDG) and other metabolic conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Congenital disorder of glycosylation type IIn (CDG-IIn) Defective UDP-GlcA transport leads to impaired glycosylation of proteins and proteoglycans OMIM #610845; ClinVar
SLC35B3-related disorder (unspecified) Loss-of-function mutations in SLC35B3 disrupt nucleotide-sugar transport, causing multisystem glycosylation defects ClinVar; PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 High
Kidney 9.8 Medium
Pancreas 7.2 Medium
Heart 5.1 Low
Brain 3.4 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 (liver cancer) 14.2 High expression
HEK293 (embryonic kidney) 10.1 Medium expression
A549 (lung cancer) 6.8 Low expression
K562 (leukemia) 4.5 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) Missense <0.01% Likely loss of start codon, loss of function
c.214C>T (p.Arg72Trp) Missense 0.02% Impaired transporter activity
c.487G>A (p.Gly163Arg) Missense <0.01% Reduced UDP-GlcA transport
c.632_633del (p.Glu211Glyfs*12) Frameshift <0.01% Premature truncation, loss of function
Mutation functional classification

Loss of Function (LOF)

Most reported mutations (e.g., frameshift, missense affecting transporter activity) are predicted to cause loss of function, leading to reduced UDP-GlcA transport and glycosylation defects.

Gain of Function (GOF)

No gain-of-function mutations have been reported for SLC35B3.

Dominant Negative (DN)

No dominant-negative mutations have been described; the disorder is typically autosomal recessive.

Gene Ontology (GO)

• GO:0000139 (Golgi membrane) • GO:0005459 (UDP-glucuronic acid transmembrane transporter activity)
• GO:0015780 (UDP-glucuronic acid transport) • GO:0016021 (integral component of membrane)
• GO:0006486 (protein glycosylation)

Pathways

Nucleotide-sugar transport (Reactome: R-HSA-425407)
Glycosaminoglycan metabolism (Reactome: R-HSA-1630316)
Congenital disorders of glycosylation (KEGG: hsa00510)

Protein Summary

The SLC35B3 protein (UniProt Q9Y2A2) is a 324-amino acid multi-pass transmembrane protein localized to the Golgi apparatus. It functions as a nucleotide-sugar transporter, specifically transporting UDP-glucuronic acid (UDP-GlcA) from the cytosol into the Golgi lumen. This transport is essential for the biosynthesis of glycosaminoglycans (e.g., heparan sulfate, chondroitin sulfate) and glycoproteins. The protein contains 10 predicted transmembrane helices and a conserved nucleotide-sugar transporter domain. Defects in SLC35B3 lead to congenital disorder of glycosylation type IIn (CDG-IIn), characterized by developmental delay, hypotonia, and coagulation abnormalities.

Related Products

Product name Cat.No. Species Gene ID
SLC35B3 Knockout HEK293 Cell Line EDC08070 Human 51000 Details Get a Quote
SLC35B3 Knockout A-549 Cell Line EDJ-KQ38526 Human 51000 Details Get a Quote
SLC35B3 Knockout HCT 116 Cell Line EDJ-KQ38528 Human 51000 Details Get a Quote
SLC35B3 Knockout HeLa Cell Line EDJ-KQ38529 Human 51000 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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