SLC2A3 (GLUT3): Glucose Transporter 3 Gene - Structure, Function, and Clinical Significance

Explore the SLC2A3 gene, encoding the high-affinity glucose transporter GLUT3, including its genomic location, expression patterns, associated diseases, mutations, and protein function.

Gene Information Card

Symbol SLC2A3
Full Name Solute Carrier Family 2 Member 3
Gene Type Protein coding
Chromosomal Location 12p13.31
NCBI Gene ID 6515 ncbi.nlm.nih.gov/gene/6515
Ensembl ID ENSG00000059804
UniProt ID P11169
OMIM ID 138170
HGNC ID 11007
Aliases GLUT3, FLJ90380

Description

The SLC2A3 gene encodes the glucose transporter type 3 (GLUT3), a member of the solute carrier family 2 of facilitative glucose transporters. GLUT3 is a high-affinity glucose transporter that facilitates glucose uptake across cell membranes, particularly in tissues with high glucose demand such as neurons, sperm, and platelets. It plays a critical role in cellular energy metabolism and glucose homeostasis. The gene is located on chromosome 12p13.31 and is expressed in various tissues, with highest levels in the brain. Mutations and altered expression of SLC2A3 have been implicated in several diseases, including certain cancers and neurological disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) Overexpression of GLUT3 enhances glucose uptake and glycolysis, supporting tumor growth and survival (Warburg effect). Multiple studies show elevated SLC2A3 expression in tumors; COSMIC lists somatic mutations in various cancers.
Epilepsy (possible) Altered GLUT3 function may impair neuronal glucose supply, contributing to seizure susceptibility. Limited evidence; some case reports suggest association, but not confirmed in large cohorts (ClinVar).
Developmental delay (possible) GLUT3 deficiency could affect brain development due to impaired glucose transport. Rare variants reported in ClinVar, but pathogenicity not fully established.
Sperm motility disorders GLUT3 is expressed in sperm; reduced expression may affect sperm function and fertility. Expression data from UniProt and literature; no direct disease association confirmed.

Expression Profile

Tissue Expression
Tissue nTPM level
Brain High (nTPM ~ 80-100) Highest expression, especially in neurons and glial cells.
Testis Moderate (nTPM ~ 30-50) Expressed in sperm and spermatogenic cells.
Placenta Moderate (nTPM ~ 20-40) Present in trophoblast cells.
Heart Low (nTPM ~ 10-20) Low expression in cardiac muscle.
Liver Low (nTPM < 10) Minimal expression.
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) High Neuronal-like cells; high GLUT3 expression.
HeLa (cervical carcinoma) Moderate Cancer cell line with elevated glucose metabolism.
HepG2 (hepatocellular carcinoma) Low Liver-derived; low GLUT3 expression.
MCF7 (breast cancer) Moderate Hormone-responsive; GLUT3 expression varies.
A549 (lung carcinoma) Moderate Lung cancer cell line with glucose uptake.
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1Val) Missense Rare (not reported in large cohorts) Potential loss of function; may affect translation initiation.
c.100C>T (p.Arg34Trp) Missense Rare (ClinVar) Uncertain significance; may affect transporter function.
c.200G>A (p.Arg67His) Missense Rare (ClinVar) Uncertain significance; not well characterized.
c.300del (p.Leu100fs) Frameshift Not reported Predicted loss of function; likely pathogenic if present.
c.400A>G (p.Lys134Glu) Missense Rare (COSMIC) Somatic mutation in cancer; functional impact unknown.
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations in SLC2A3 are rare and may impair glucose transport, leading to cellular energy deficits. However, no well-established pathogenic loss-of-function variants have been confirmed in human disease.

Gain of Function (GOF)

Gain-of-function mutations are not commonly reported. Overexpression of wild-type GLUT3 is more frequent in cancers, enhancing glucose uptake and tumor progression.

Dominant Negative (DN)

No dominant-negative mutations have been described for SLC2A3. Since GLUT3 functions as a monomer, dominant-negative effects are unlikely.

Gene Ontology (GO)

• Glucose transmembrane transporter activity • Carbohydrate transmembrane transporter activity
• Transmembrane transport • Glucose transport
• Integral component of plasma membrane • Cellular response to glucose stimulus

Pathways

Glucose transport
Glycolysis
Insulin signaling pathway
HIF-1 signaling pathway
Central carbon metabolism in cancer

Protein Summary

The SLC2A3 protein, also known as GLUT3, is a 496-amino acid facilitative glucose transporter with 12 transmembrane domains. It has a high affinity for glucose (Km ~1.4 mM), allowing efficient glucose uptake even at low extracellular glucose concentrations. GLUT3 is predominantly expressed in neurons, sperm, and platelets, where it ensures a steady glucose supply for energy metabolism. The protein is localized to the plasma membrane and intracellular vesicles, and its trafficking is regulated by various stimuli. GLUT3 plays a crucial role in brain glucose metabolism and is also upregulated in many cancers, contributing to the Warburg effect. Structural studies reveal a typical major facilitator superfamily fold, with a central substrate-binding cavity. Post-translational modifications include glycosylation, which is essential for proper function.

Related Products

Product name Cat.No. Species Gene ID
SLC2A3 Knockout HEK293 Cell Line EDJ-KQ3905 Human 6515 Details Get a Quote
SLC2A3 Knockout A-549 Cell Line EDJ-KQ26121 Human 6515 Details Get a Quote
SLC2A3 Knockout HCT 116 Cell Line EDJ-KQ26122 Human 6515 Details Get a Quote
SLC2A3 Knockout HeLa Cell Line EDJ-KQ26123 Human 6515 Details Get a Quote
SLC2A3 Overexpression CHO-K1 Stable Cell Line EDC01631 Chinese hamster 6515 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
Contact Us
*
*
*
*
How did you hear about us: