SLC25A3: Solute Carrier Family 25 Member 3

Mitochondrial Phosphate Carrier – Role in Oxidative Phosphorylation and Disease

Gene Information Card

Symbol SLC25A3
Full Name Solute carrier family 25 member 3
Gene Type Protein coding
Chromosomal Location 12q23.1
NCBI Gene ID 5250 ncbi.nlm.nih.gov/gene/5250
Ensembl ID ENSG00000175489
UniProt ID Q00325
OMIM ID 600370
HGNC ID 10989
Aliases PHC, PTP, MGC111102

Description

SLC25A3 encodes the mitochondrial phosphate carrier (PiC), a transmembrane protein located in the inner mitochondrial membrane. It mediates the import of inorganic phosphate (Pi) into the mitochondrial matrix, which is essential for oxidative phosphorylation and ATP synthesis. The gene produces two splice variants: isoform A (heart/muscle) and isoform B (ubiquitous). Mutations in SLC25A3 cause mitochondrial phosphate carrier deficiency, a rare autosomal recessive disorder characterized by hypertrophic cardiomyopathy, muscle weakness, and lactic acidosis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Mitochondrial phosphate carrier deficiency Loss-of-function mutations impair Pi import into mitochondria, reducing ATP production and causing energy deficiency in heart and muscle. OMIM #610773; ClinVar pathogenic variants
Hypertrophic cardiomyopathy Secondary to mitochondrial dysfunction; reduced ATP leads to compensatory cardiac hypertrophy. Case reports (Mayr et al., 2011, PMID: 21228398)
Lactic acidosis Impaired oxidative phosphorylation shifts metabolism to glycolysis, increasing lactate production. Biochemical evidence in patients with SLC25A3 mutations

Expression Profile

Tissue Expression
Tissue nTPM level
Heart 27.8 High
Skeletal muscle 18.5 High
Liver 9.2 Medium
Kidney 8.1 Medium
Brain 6.3 Medium
Cell Line Expression
Cell Line nTPM Notes
HeLa 15.2 Ubiquitous expression
HEK293 12.8 Moderate expression
HepG2 10.5 Moderate expression
K562 7.1 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.215G>A (p.Gly72Asp) Missense Rare Loss of phosphate transport activity; associated with mitochondrial phosphate carrier deficiency
c.158C>T (p.Thr53Ile) Missense Rare Impaired protein stability and function
c.439C>T (p.Arg147Trp) Missense Rare Reduced Pi uptake in yeast complementation assays
Mutation functional classification

Loss of Function (LOF)

Most reported missense mutations (e.g., p.Gly72Asp, p.Thr53Ile) reduce or abolish phosphate transport, leading to mitochondrial energy deficiency.

Gain of Function (GOF)

No gain-of-function mutations reported.

Dominant Negative (DN)

No dominant-negative mechanism described; disease is autosomal recessive.

Pathways

Mitochondrial phosphate carrier (SLC25A3) – Reactome R-HSA-8949215
Oxidative phosphorylation – KEGG hsa00190
Mitochondrial transport – WikiPathways WP111

Protein Summary

The SLC25A3 protein (mitochondrial phosphate carrier) is a 362-amino acid transmembrane protein with six alpha-helical domains. It forms a homodimer and functions as a phosphate/hydroxyl antiporter or phosphate/proton symporter. The protein is essential for providing inorganic phosphate for ATP synthesis via ATP synthase. Isoform A is predominantly expressed in heart and skeletal muscle, while isoform B is found in all tissues. Defects in this protein lead to impaired mitochondrial energy production.

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Displaying Records 1 To 15 Of 45 Records
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